Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2109
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 383 KPTPSGRSPAXSSGTKGNDPRAXQQFXGVKKAXPPFLAXVPSPDG 517
           +P  + +S   SSG  G  P   Q     ++  PP  +  P P G
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 88  LTSFRAIHHVLQGRKXPPLPGSPKSETGSSGP 183
           L  +  ++ VL     PP P  P     SSGP
Sbjct: 322 LMEYCLVNIVLGDSDTPPKPAPPPPPPSSSGP 353


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 HLYPDPQKVKPVHLDPEDQAS 199
           H+YP+P    P +  PE  A+
Sbjct: 452 HIYPNPDVFDPDNFLPEKTAN 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,921
Number of Sequences: 438
Number of extensions: 3211
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)