Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2109
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote...    36   0.024
At3g60670.1 68416.m06788 zinc-binding protein, putative similar ...    30   1.2  
At4g35460.1 68417.m05040 thioredoxin reductase 1 / NADPH-depende...    28   4.7  
At3g50610.1 68416.m05534 hypothetical protein                          27   6.2  
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    27   6.2  
At3g15300.1 68416.m01932 VQ motif-containing protein contains PF...    27   8.3  

>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 686

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 365 TPGLGLKPTPSGRSPAXSSGTKGNDPRAXQQFXGV---KKAXPPFLAXVPSPD 514
           T  L  +P PS  SP+    T+ + PR+   F  V   KK  PP +  VPSPD
Sbjct: 244 TSNLAAEPAPSAPSPSPGIITEAS-PRSSGSFPAVTNAKKRRPPLVPPVPSPD 295


>At3g60670.1 68416.m06788 zinc-binding protein, putative similar to
           zinc-binding protein [Pisum sativum] GI:16117799;
           contains Pfam profile PF04640 : Protein of unknown
           function, DUF597
          Length = 245

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 362 TTPGLGLKPTPSGRSPAXSSGTKGND 439
           TTP   L+PT S R+ + SSG +G D
Sbjct: 161 TTPSSTLEPTGSNRTSSESSGNEGED 186


>At4g35460.1 68417.m05040 thioredoxin reductase 1 / NADPH-dependent
           thioredoxin reductase 1 (NTR1) identical to SP|Q39243
          Length = 375

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 333 WAAREKHXLALPQGWA*NQPLPGGXQXCXLVPREMTPGXPNSXLGLK 473
           +AAR +    L +GW  N   PGG Q       E  PG P   LG++
Sbjct: 68  YAARAELKPLLFEGWMANDIAPGG-QLTTTTDVENFPGFPEGILGVE 113


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +2

Query: 359 GTTPGLG------LKPTPSGRSPAXSSGTKGNDPRA 448
           G +PG+G       KPT  G SP      K ++P+A
Sbjct: 194 GNSPGMGHKKGDDFKPTTPGHSPGVGHAVKNDEPKA 229


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 115 VLQGRKXPPLPGSPKSETGSSGPRRPGQFCGXTGSSWSKIAXXLFYLLLCTRHPSPLSXV 294
           +++G+         +S   +S   RPG FCG    +W+ +      L L TR    LS V
Sbjct: 497 IIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEV 556

Query: 295 D 297
           +
Sbjct: 557 E 557


>At3g15300.1 68416.m01932 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 219

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 82  SDLTSFRAIHHVLQGRKXPPLPGSPKSETGSSG 180
           +D +SF+ +  +L G   P  P SP+  T  SG
Sbjct: 42  ADSSSFKQVVQMLTGSSSPRSPDSPRPPTTPSG 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,406
Number of Sequences: 28952
Number of extensions: 224459
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)