Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2108
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.8  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   4.8  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   6.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.5  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 369 NYXPLFNAGFEPYSLKETIIFKSICIDRSI 280
           ++ PL+  GFE ++++  I F +I +  SI
Sbjct: 381 HFGPLYGVGFELWTMQPNIRFSNIYVGHSI 410


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 117 LLTVCTM*RYALNLQYASSYSSRLYWNEISLY 22
           L+ V    RY +N+++++  S   Y+N ISLY
Sbjct: 66  LVKVAGFQRYIVNVEFSNVQSYFRYYNYISLY 97


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 14  KILYKEISFQYKRDEYEEAYCKFSAYRYIVHTVSSDN 124
           K   +E++ Q+    YE+ +C+FS Y  +   V  DN
Sbjct: 63  KFTQRELAEQFDAF-YEDMFCEFSKYGEVEQLVVCDN 98


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 339 EPYSLKETIIFKSICIDRSI 280
           E YSL+ T IF  +C+ R I
Sbjct: 124 EVYSLQGTSIFNPVCVKRKI 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,760
Number of Sequences: 5004
Number of extensions: 36886
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)