Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2108
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.      29   3.3  
AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical ...    29   3.3  
U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbona...    28   5.9  
U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbona...    28   5.9  
AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion transpo...    28   5.9  
AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion transpo...    28   5.9  

>Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 297 CIDRSITFFCPNAQIATFDNRRLICSVPSSC*IACLIYY 181
           C  + + FFC + Q++  D   L+CS    C I  L +Y
Sbjct: 29  CRQKLLEFFCSHDQLSASDCSTLVCSKYFGCNIPSLTFY 67


>Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 297 CIDRSITFFCPNAQIATFDNRRLICSVPSSC*IACLIYY 181
           C  + + FFC + Q++  D   L+CS    C I  L +Y
Sbjct: 29  CRQKLLEFFCSHDQLSASDCSTLVCSKYFGCNIPSLTFY 67


>Z92824-4|CAB07307.2|  395|Caenorhabditis elegans B0413.2 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 121 VTAYSMHYVTICTELTICFLIFITFVLERNFFI*Y 17
           VT      V +C  LTICF ++  F+ E+   I Y
Sbjct: 321 VTLIVFSAVVLCQVLTICFALYFVFMREKEVKIIY 355


>AL132948-5|CAC51071.1|  321|Caenorhabditis elegans Hypothetical
           protein Y39B6A.6 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 121 VTAYSMHYVTICTELTICFLIFITFVLERNFFI*Y 17
           VT      V +C  LTICF ++  F+ E+   I Y
Sbjct: 247 VTLIVFSAVVLCQVLTICFALYFVFMREKEVKIIY 281


>U40947-4|AAZ32798.1|  883|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform b protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 115 AYSMHYVTICTELTICFLIFITFVLERNFFI 23
           A+ +HYVTI TE   C LI + F  E   FI
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSEVVEFI 578


>U40947-3|AAZ32797.1|  956|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 4, isoform a protein.
          Length = 956

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 115 AYSMHYVTICTELTICFLIFITFVLERNFFI 23
           A+ +HYVTI TE   C LI + F  E   FI
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSEVVEFI 578


>AY954522-1|AAX34430.1|  936|Caenorhabditis elegans anion
           transporter ABTS-4b protein.
          Length = 936

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 115 AYSMHYVTICTELTICFLIFITFVLERNFFI 23
           A+ +HYVTI TE   C LI + F  E   FI
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSEVVEFI 578


>AY887906-1|AAX34418.1|  956|Caenorhabditis elegans anion
           transporter ABTS-4a protein.
          Length = 956

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 115 AYSMHYVTICTELTICFLIFITFVLERNFFI 23
           A+ +HYVTI TE   C LI + F  E   FI
Sbjct: 548 AHLIHYVTIYTEDIFCALISLIFFSEVVEFI 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,168
Number of Sequences: 27780
Number of extensions: 197947
Number of successful extensions: 428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)