Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2106
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0LPV9 Cluster: Na-Ca exchanger/integrin-beta4 precurso...    32   7.6  
UniRef50_A0ZFZ3 Cluster: Helicase domain protein; n=3; Bacteria|...    32   7.6  

>UniRef50_Q0LPV9 Cluster: Na-Ca exchanger/integrin-beta4 precursor;
            n=1; Herpetosiphon aurantiacus ATCC 23779|Rep: Na-Ca
            exchanger/integrin-beta4 precursor - Herpetosiphon
            aurantiacus ATCC 23779
          Length = 3417

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 321  WTSSRPTGVKWLPESIGISNANAVT 247
            W  + PTG+ ++P S  ISNAN VT
Sbjct: 1879 WVDTIPTGMSYVPGSAQISNANGVT 1903


>UniRef50_A0ZFZ3 Cluster: Helicase domain protein; n=3;
           Bacteria|Rep: Helicase domain protein - Nodularia
           spumigena CCY 9414
          Length = 1004

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 331 TIIEDSLNNSLKIKFDMSSIPLTLPKRVNRNXQPRSIPRXWYNLMNDLYAPFN 489
           T+ + +  N  +IK+D   +   L KR+N+N QP+ I +  Y   N  Y  F+
Sbjct: 690 TLKDSNYTNKNQIKWDRE-LTKYLDKRINKNFQPQQIIKSLYRPYNQQYLYFD 741


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,861,319
Number of Sequences: 1657284
Number of extensions: 9397146
Number of successful extensions: 17082
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17081
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)