Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2106
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   7.3  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   7.3  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.7  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 334 IIEDSLNNSLKIKFDMSSIPL 396
           II+ SLN  LK+K D+  +PL
Sbjct: 35  IIDKSLNRKLKLKTDLWVMPL 55


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 86  EFPKYRGKFKVFLEILVSPLE*VQGPCREAVMRFDMK 196
           E   Y+ ++    E L   L  +QG C E ++RF  K
Sbjct: 287 EVKSYKHEYANICESLRRALVLIQGSCTEKILRFKEK 323


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 398 VNGIEDMSNLIFKLLFNESSIIV*MXGRAHGR 303
           V  IED++N +++   NE+S+      R H R
Sbjct: 365 VGNIEDITNYMYETFINEASLCDKFMKRKHER 396


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 514 AQFYLWSRH*KGHINRSLNYTSXLVS 437
           A++YLW RH    +N +L     L+S
Sbjct: 713 ARYYLWRRHFAESLNATLKAYRILIS 738


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 294 KWLPESIGISNANAVTHLEI 235
           KW PE + +   N ++H E+
Sbjct: 130 KWAPEGVTVEKKNCLSHHEV 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,681
Number of Sequences: 5004
Number of extensions: 40347
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)