Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2106
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    28   3.9  

>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 169 TAGSLYLFKRAHKNLQKNLKF 107
           TAG LY F+RAH  +++N+ F
Sbjct: 307 TAGRLYDFRRAHVRVKRNMNF 327


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical protein
            C08B11.3 protein.
          Length = 1244

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 195  FISKRITASRQGPCTYSSGLTRISKKTLNFPRYFGNS*YELRKNNSVIC 49
            F+S+ +T   +GP T S  LT       N  RY      +LR++ S IC
Sbjct: 1060 FLSRELTDEAEGPVTKSIRLTS-CLILRNLARYSAEGRQKLRRHESHIC 1107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,515,593
Number of Sequences: 27780
Number of extensions: 220951
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)