Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2106
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11780.1 68418.m01375 expressed protein                             28   3.6  
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /...    28   3.6  

>At5g11780.1 68418.m01375 expressed protein 
          Length = 494

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 151 LFKRAHKNLQKNLKFSP 101
           LFK  H NLQ+N KF P
Sbjct: 458 LFKHRHSNLQENSKFQP 474


>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
           40S ribosomal protein S27A (RPS27aA) strong similarity
           to ubiquitin extension protein (UBQ5) GB:AAA32906
           GI:166934 from (Arabidopsis thaliana)
          Length = 156

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 193 HIETHYCFTAGSLYLFKRA 137
           H + HYC   G+ Y+FK+A
Sbjct: 135 HFDRHYCGKCGTTYVFKKA 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,933
Number of Sequences: 28952
Number of extensions: 206469
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)