Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2105
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055           29   1.4  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    28   3.1  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    27   4.1  
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    27   5.5  
04_04_1225 - 31865556-31865590,31865687-31865734,31866179-318662...    27   7.2  
12_01_0079 + 644754-645932,645966-646061,646193-647122                 26   9.5  

>10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055
          Length = 447

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 208 ITFNSSGWASGPTNA*RMTSLVLRGYSALP 119
           ITF S+GW    T+A  +TS V +G+   P
Sbjct: 213 ITFMSTGWEGSATDARVLTSAVNKGFQVPP 242


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 208 ITFNSSGWASGPTNA*RMTSLVLRGYSALP 119
           ITF S GW    T+A  +TS V +G+   P
Sbjct: 375 ITFMSIGWEGSATDARVLTSAVNKGFQVPP 404


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +3

Query: 117 RGKAEYPRSTKLVIRQALVGPD----AQPDELNVIQXEAMSLP 233
           RG   +P  T+L +  A+  P     AQP ELN +   A +LP
Sbjct: 37  RGSDAHPIPTELNVSAAVARPPQPPHAQPTELNAVAAAASALP 79


>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 108 WGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSL 230
           WGS        +     R+ L+ PDA PDE  +    ++SL
Sbjct: 8   WGSNPLEPVVHTVAAFSRRLLIAPDAAPDEARLRPLLSLSL 48


>04_04_1225 -
           31865556-31865590,31865687-31865734,31866179-31866262,
           31866336-31866395,31866589-31866642,31866747-31867710
          Length = 414

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 75  VTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSLPEAVK 245
           V+ SS H  E+ G R     P      I+++L GP  QP+  N  Q   M  PE+ +
Sbjct: 310 VSESSKHTEESSGERHLLNVPVMD--AIKESL-GPKEQPNATNSKQQTFMEPPESTE 363


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 44  NHHDGRVFLWXHPFIITSVRDMGIQRQSRIPTQHQARHSSS 166
           N H G   +W  P +  S+   G Q +  +P  +Q  H +S
Sbjct: 620 NEHGGTWQMWGTPLVQESLGLRGPQTEWLLPNTNQFNHGAS 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,524,938
Number of Sequences: 37544
Number of extensions: 226809
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)