Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2105
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                28   3.2  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                27   4.3  
SB_13268| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.6e-15)       27   5.6  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 26   9.8  
SB_35706| Best HMM Match : ig (HMM E-Value=1.6)                        26   9.8  

>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 164 SIGRSRCP-TR*IKCDPGGSHVPPRSSKTXXPXX*KVGESRXCPSGH 301
           S+ ++ C   R + CD GG++ PP       P   K+G  +   +GH
Sbjct: 153 SVTKTTCDWPRYVDCDIGGAYKPPFRCNLRDPIPKKIGCLKGWENGH 199


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 164 SIGRSRCP-TR*IKCDPGGSHVPPRSSKTXXPXX*KVGESRXCPSGH 301
           S+ ++ C   R + CD GG++ PP       P   K+G  +    GH
Sbjct: 60  SVTKTTCDWPRYVDCDIGGAYKPPFRCNLRDPIPKKIGCLKGWEDGH 106


>SB_13268| Best HMM Match : Glyco_transf_54 (HMM E-Value=5.6e-15)
          Length = 642

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 75  VTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPD 194
           + L    + E WG+R   EY    KL  R++ VG +++ D
Sbjct: 198 IKLGYPKRDEQWGARISKEYELDRKLTTRES-VGAESEED 236


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 182 CPTR*IKCDPGGSHVPPRSS 241
           CP R + C   GSHVPP+ S
Sbjct: 138 CPFR-VSCGALGSHVPPQES 156


>SB_35706| Best HMM Match : ig (HMM E-Value=1.6)
          Length = 120

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -1

Query: 232 GRDMASXWITFNSSGWASGPTNA*RMTSLVLRGYSALPLDPH 107
           GR     +  F+  GW +       +T L+ R + +  L PH
Sbjct: 65  GRYFCKLYTNFDHGGWTNTRVEVANITQLLSRSFCSCLLKPH 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,232
Number of Sequences: 59808
Number of extensions: 229357
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)