Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2105
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel, voltag...    30   3.3  
AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated c...    30   3.3  
AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel ...    30   3.3  
AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium chann...    29   4.3  
AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-typ...    29   4.3  

>AJ420779-1|CAD12646.1| 2347|Homo sapiens calcium channel,
           voltage-dependent, T type, alphant regulator of
           chromatin, sub protein.
          Length = 2347

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  HPFIITSVRDMGIQRQSRIPTQHQARHSSSIG 172
           +PFI +S RD G+Q+ S IP + + R   ++G
Sbjct: 287 NPFICSSRRDNGMQKCSHIPGRRELRMPCTLG 318


>AF073931-1|AAD17668.1| 2353|Homo sapiens low-voltage activated
           calcium channel alpha 1H protein.
          Length = 2353

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  HPFIITSVRDMGIQRQSRIPTQHQARHSSSIG 172
           +PFI +S RD G+Q+ S IP + + R   ++G
Sbjct: 287 NPFICSSRRDNGMQKCSHIPGRRELRMPCTLG 318


>AF051946-1|AAC67239.3| 2353|Homo sapiens T-type calcium channel
           alpha 1H subunit protein.
          Length = 2353

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  HPFIITSVRDMGIQRQSRIPTQHQARHSSSIG 172
           +PFI +S RD G+Q+ S IP + + R   ++G
Sbjct: 287 NPFICSSRRDNGMQKCSHIPGRRELRMPCTLG 318


>AL031703-1|CAC42094.1|  808|Homo sapiens c302G6.1 (calcium channel,
           voltage-dependent, alpha 1H subunit) protein.
          Length = 808

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  HPFIITSVRDMGIQRQSRIPTQHQARHSSSIG 172
           +PFI +S RD G+Q+ S IP + + R   ++G
Sbjct: 230 NPFICSSRRDNGMQKCSHIPGRRELRVPCTLG 261


>AE006466-3|AAK61268.1| 2373|Homo sapiens voltage dependent t-type
           calcium channel alpha-1H subunit protein.
          Length = 2373

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 77  HPFIITSVRDMGIQRQSRIPTQHQARHSSSIG 172
           +PFI +S RD G+Q+ S IP + + R   ++G
Sbjct: 307 NPFICSSRRDNGMQKCSHIPGRRELRVPCTLG 338


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,140,070
Number of Sequences: 237096
Number of extensions: 1276172
Number of successful extensions: 2121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2121
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)