Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2105
(400 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X99293-1|CAA67679.1| 152|Drosophila melanogaster CRP1 protein p... 51 5e-07
U59498-1|AAC47295.1| 152|Drosophila melanogaster nucleoplasmin-... 51 5e-07
AY119592-1|AAM50246.1| 152|Drosophila melanogaster LD16456p pro... 51 5e-07
AE014297-4506|AAF56988.1| 152|Drosophila melanogaster CG7917-PA... 51 5e-07
AE014297-4505|AAF56987.1| 156|Drosophila melanogaster CG7911-PA... 39 0.003
X79243-1|CAA55830.1| 1213|Drosophila melanogaster dTAF II 150 pr... 31 0.75
AY070564-1|AAL48035.1| 1221|Drosophila melanogaster LD43729p pro... 31 0.75
AE014296-1772|AAF50190.2| 1221|Drosophila melanogaster CG6711-PA... 31 0.75
AE014297-4219|AAF56777.1| 114|Drosophila melanogaster CG12852-P... 29 2.3
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 27 9.2
>X99293-1|CAA67679.1| 152|Drosophila melanogaster CRP1 protein
protein.
Length = 152
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSL 230
M +E FYGVTL++ S TW +Y R KLVI+Q L+G +A+ +E NV+ E +
Sbjct: 1 MAEESFYGVTLTAESDSVTWDV--DEDYARGQKLVIKQILLGAEAKENEFNVV--EVNTP 56
Query: 231 PEAVKLP 251
++V++P
Sbjct: 57 KDSVQIP 63
>U59498-1|AAC47295.1| 152|Drosophila melanogaster
nucleoplasmin-like protein protein.
Length = 152
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSL 230
M +E FYGVTL++ S TW +Y R KLVI+Q L+G +A+ +E NV+ E +
Sbjct: 1 MAEESFYGVTLTAESDSVTWDV--DEDYARGQKLVIKQILLGAEAKENEFNVV--EVNTP 56
Query: 231 PEAVKLP 251
++V++P
Sbjct: 57 KDSVQIP 63
>AY119592-1|AAM50246.1| 152|Drosophila melanogaster LD16456p
protein.
Length = 152
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSL 230
M +E FYGVTL++ S TW +Y R KLVI+Q L+G +A+ +E NV+ E +
Sbjct: 1 MAEESFYGVTLTAESDSVTWDV--DEDYARGQKLVIKQILLGAEAKENEFNVV--EVNTP 56
Query: 231 PEAVKLP 251
++V++P
Sbjct: 57 KDSVQIP 63
>AE014297-4506|AAF56988.1| 152|Drosophila melanogaster CG7917-PA
protein.
Length = 152
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETWGSRGKAEYPRSTKLVIRQALVGPDAQPDELNVIQXEAMSL 230
M +E FYGVTL++ S TW +Y R KLVI+Q L+G +A+ +E NV+ E +
Sbjct: 1 MAEESFYGVTLTAESDSVTWDV--DEDYARGQKLVIKQILLGAEAKENEFNVV--EVNTP 56
Query: 231 PEAVKLP 251
++V++P
Sbjct: 57 KDSVQIP 63
>AE014297-4505|AAF56987.1| 156|Drosophila melanogaster CG7911-PA
protein.
Length = 156
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETWGSRGKAE--YPRSTKLVIRQALVGPDAQPDELNVIQXE 218
M E FYGVTLS + E S KL+I+Q +GP+A+ E NV+Q E
Sbjct: 1 MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAE 58
>X79243-1|CAA55830.1| 1213|Drosophila melanogaster dTAF II 150
protein.
Length = 1213
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 60 EFFYGVTLSSSHQSETWGSRGKAEY 134
E F+G ++S H S+TW ++G AEY
Sbjct: 344 EQFFGCFITSHHWSDTWLAKGIAEY 368
>AY070564-1|AAL48035.1| 1221|Drosophila melanogaster LD43729p
protein.
Length = 1221
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 60 EFFYGVTLSSSHQSETWGSRGKAEY 134
E F+G ++S H S+TW ++G AEY
Sbjct: 344 EQFFGCFITSHHWSDTWLAKGIAEY 368
>AE014296-1772|AAF50190.2| 1221|Drosophila melanogaster CG6711-PA
protein.
Length = 1221
Score = 30.7 bits (66), Expect = 0.75
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 60 EFFYGVTLSSSHQSETWGSRGKAEY 134
E F+G ++S H S+TW ++G AEY
Sbjct: 344 EQFFGCFITSHHWSDTWLAKGIAEY 368
>AE014297-4219|AAF56777.1| 114|Drosophila melanogaster CG12852-PA
protein.
Length = 114
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +1
Query: 85 HHHISQRHGDPEAKQNTHAAPSSSFVKHW*VQMPNQMN*M*SRXKPCPSQKQ 240
HH + Q+H + +Q H + HW VQ Q + + P Q+Q
Sbjct: 50 HHQLQQQHSHNQHQQQQHYIHQLYYPSHW-VQQQQQQQQQVANNEQQPQQQQ 100
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +3
Query: 84 SSSHQSETWGSRGKAEYPRSTKLVIRQALVGP 179
S++++ TW G+++ P TK++I ++++ P
Sbjct: 834 STAYRKLTWILNGRSKLPTKTKILILKSVLSP 865
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,495
Number of Sequences: 53049
Number of extensions: 368339
Number of successful extensions: 809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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