Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2105
(400 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 23 1.3
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 22 2.2
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 3.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 3.9
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 3.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 5.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 5.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 6.9
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 20 9.1
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 20 9.1
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 20 9.1
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 20 9.1
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 23.0 bits (47), Expect = 1.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 44 NHHDGRVFLWXHPFIITS 97
+H+DGR+ W P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 22.2 bits (45), Expect = 2.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 51 MTDEFFYGVTLSSSHQSETW 110
M+DE YG+ + S Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 296 GHLNSXXAPVTFTXWSR 346
G +NS PV + WSR
Sbjct: 379 GWINSGMNPVIYACWSR 395
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 140 AWVFCFASGSPCL 102
AW+ C A+GSP L
Sbjct: 48 AWLDCTATGSPPL 60
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 3.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 140 AWVFCFASGSPCL 102
AW+ C A+GSP L
Sbjct: 48 AWLDCTATGSPPL 60
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 5.2
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +1
Query: 85 HHHISQRHGDPEAKQNTHAAPSSSFVK 165
H H++++ PE +++ ++ SS K
Sbjct: 343 HLHVAKQMASPEPPKSSESSTGSSIPK 369
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.0 bits (42), Expect = 5.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 116 QRQSRIPTQHQARHSSSIG 172
Q+Q + QHQAR +G
Sbjct: 1225 QQQQQQQQQHQAREREGVG 1243
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 20.6 bits (41), Expect = 6.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 62 VFLWXHPFIITSVRDMGIQRQSRIPTQHQARHSSS 166
VF F++ V D+ Q + + T +RH S+
Sbjct: 273 VFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYST 307
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 20.2 bits (40), Expect = 9.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 170 QCLTNDELGAAWVFCFASGSPCL 102
+ L ND L + CF CL
Sbjct: 34 EILANDRLRNQYYDCFIDAGSCL 56
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 20.2 bits (40), Expect = 9.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 240 VKLPXXXXERLGNQGXVRLDI 302
+K ERL NQG +DI
Sbjct: 471 IKAGEIDAERLNNQGIESIDI 491
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 20.2 bits (40), Expect = 9.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 170 QCLTNDELGAAWVFCFASGSPCL 102
+ L ND L + CF CL
Sbjct: 34 EILANDRLRNQYYDCFIDAGSCL 56
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.2 bits (40), Expect = 9.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 143 HQARHSSSIGRSRC 184
H + SS++GRS C
Sbjct: 286 HHSHLSSALGRSAC 299
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,774
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9885360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -