Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2103
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   51   9e-07
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.050
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     31   0.62 
SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)                  30   1.9  
SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    29   3.3  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   5.7  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   5.7  

>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
 Frame = +3

Query: 108  GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRLARSCP-QVQAPEHSHHQLHDASLPPA 284
            GLLG  NNE +D+   PNGK   S  EF N++ +      Q+Q       +   +     
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEVTNDTKCQIQRYIKPKSKCPTSRYSSR 1870

Query: 285  CEQVF-GGISPLRTLSLFMDMSPFRQAC--IHAVTGTDAAKDLHEACDLGRGMAALALTG 455
            C ++F    SPL       +  PF  AC   +A   +  AKD+         +  L + G
Sbjct: 1871 CRELFKDEHSPLAPFFNITNPRPFMLACEDDYATCDSKTAKDMKHCNTTAAYIELLRMKG 1930

Query: 456  LLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNKQADIILSVETTE 590
                 LP  C +C       ++G+++ F+  +K  D++L V  T+
Sbjct: 1931 EWAEFLPE-CGRCAS----HEMGNTW-FQKGSKLVDVVLIVPETQ 1969


>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 39  SSAHLNLRCATLKLTASTWVN--LRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 209
           SS H+      +++ A+ ++   LRGL GD N E YD+F+ P G+   +  +F  A+RL
Sbjct: 2   SSLHVVYMSNRIQVHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 102  LRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 209
            LRGL GD N E YD+F+ P G+   +  +F  A+RL
Sbjct: 1435 LRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 99  NLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 209
           N  GL G+ N  P DDF + NG+   S+ EFG ++ L
Sbjct: 179 NTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 108 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 209
           GLLG  NNE +D+   PNGK   S  EF N++ +
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 81  TASTWVNLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 200
           TA+ + N  GL GD +N P +DF  P G+  T   +F  +
Sbjct: 194 TAAFYGNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233


>SB_49043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +3

Query: 24  CTVSWSSAHLNLRCATLKLTASTWVNLRGLLG-DGNNEPYDDFRLPNGKICTSESEFGNA 200
           C V+  SAH N    ++++T  TW N   L G +       D +  +G     +S    A
Sbjct: 203 CIVTNMSAHYNKSSGSIEVTWDTWCNKESLAGAEILWASIQDTQKCHGSKIVMKST-NCA 261

Query: 201 YRLARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISP 314
            +L + C Q      ++   HD       ++VF  I P
Sbjct: 262 IKLPKHCQQFNYSVRAYGVTHDNKTTIHDQRVFVNIPP 299


>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
          Length = 806

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
 Frame = +3

Query: 276 PPACEQVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAA---KDLHEACDLGRGMAALA 446
           PP C Q +  + PLR+ + F+ ++      I  V   +     K    +  L  G     
Sbjct: 238 PPECAQYYSPVQPLRSCAEFIMIAEAALVFIAVVVLANLVSLIKRKLSSLHLPPGPQPYP 297

Query: 447 LTGLLPAVL-PNVCVKCTDADKPRDIGDSYEFKVPNKQADIILSVETTESNAKTYKD 614
           L G LP ++ P + +  T+  K    G  Y   +P +Q  ++ S E       T KD
Sbjct: 298 LVGNLPHLVGPLMPLAMTELAK--KYGKIYSLTLPGQQCVVLNSSELAREALLTRKD 352


>SB_50944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 420 LGRGMAALALTGLLPAVLPNVCVKCTDADKPRDI---GDSYEFKVPNKQADIILSVETTE 590
           +  G+  L +    P + P V  K  D    R I   GD     VP +Q D  LSVE + 
Sbjct: 587 VSEGVFKLRVIVKRPELHPQVSFKAEDLKGERRILLNGDKTIAVVPKQQCDDFLSVEVSS 646

Query: 591 SN 596
           SN
Sbjct: 647 SN 648


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = -2

Query: 427 RPKSQASCKSLAASVPVTA*IHACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDAS 263
           R  S  S KSLA S+P T     C KG     NDR  S +    +C     RD S
Sbjct: 353 RRNSCISLKSLAESLPGTINESVCAKGPF---NDRWSSDEYDSMSCKSQYPRDGS 404


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +1

Query: 235 RPNTPITSCTMHPSPPPANRSSGEYRRSGPCHCSWTCRLSDKRVFTPSPAQTPLKIC 405
           R  TP++ C    +P       G+Y  +G   C WTC      +  PS  Q   K C
Sbjct: 514 RNETPVSRCNDICAP-------GQYPVNGSTRCCWTCVPCPAGLIKPSRGQDGCKGC 563


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 100  TFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 276
            T AVF  T+T S  +TS  L+  SA+   +S T  V+ +      R   P  S ++ P+
Sbjct: 1235 TSAVFPTTITPSPNITSYPLLTTSAVGNFTSATSVVFDSTTPNATR-LVPSISASISPN 1292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,188,540
Number of Sequences: 59808
Number of extensions: 485455
Number of successful extensions: 1678
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1676
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)