Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2103
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 31 0.94
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 29 2.9
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 29 2.9
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 29 2.9
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 29 2.9
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical p... 28 6.6
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 6.6
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 6.6
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.7
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 8.7
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 8.7
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 8.7
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 200 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 331
VP+ P +++ + A PSP A PPPRL +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +3
Query: 141 DDFRLPNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISPLR 320
DD +PNG ES GN + P +Q + +++ + Q G +
Sbjct: 384 DDVVIPNGAHIPKESIIGNGVMYPKELPNIQNTAIFKNAINEETFEKLSSQPIGNVH--- 440
Query: 321 TLSLFMDMSPFRQACIHAVTGTDAAKDLHEA 413
+S F + PF + ++ T +D E+
Sbjct: 441 -VSKFRNGGPFWRRSVNGKTNFALEEDDSES 470
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 425
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 425
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 425
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLG 425
++ GG L LSL + M F+ A ++ + DAA DL ++G
Sbjct: 1099 ELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTANIG 1143
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
K03H1.5 protein.
Length = 1385
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 108 GLLGDGNNEPYDDFRLPNGKI 170
GLLG NN+P DD P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056
>Z81542-10|CAB04419.4| 411|Caenorhabditis elegans Hypothetical
protein F49A5.7 protein.
Length = 411
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 121 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPAN 291
T +T+ +S L+ S+ + SS TRTV + +T I T +P P+N
Sbjct: 88 TFSTNEASSSTKLLSTSSTAEISSTTRTVSRSIKPETSTASTTIRPLTTTTTPAPSN 144
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 326 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 243
+GP ++ +P EDL G GE C+V + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 326 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 243
+GP ++ +P EDL G GE C+V + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +3
Query: 279 PACEQVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAALALTGL 458
PAC Q GG + + L + + +Q CI + A+ + C G +A + L
Sbjct: 84 PACNQQCGGNNQVILLPQTNNCNQCQQQCISSCATPICAQSCNNQCSSSCGNSAPQIVVL 143
Query: 459 LPAVLPNVCVKC 494
P N C C
Sbjct: 144 QPQ--QNQCGSC 153
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 160 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRSGPCHCS 336
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPSV 790
Query: 337 WTCRLSDKRVFTPSPAQ 387
+++ +P+ AQ
Sbjct: 791 PVTMIANIPAMSPTSAQ 807
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 160 MERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPP-ANRSSGEYRRSGPCHCS 336
+E+ L K ++ P P TP +S P PPP + ++S E ++S
Sbjct: 731 LEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPSV 790
Query: 337 WTCRLSDKRVFTPSPAQ 387
+++ +P+ AQ
Sbjct: 791 PVTMIANIPAMSPTSAQ 807
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 197 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 292
R PS P+ + A A PSPA R PPR RT
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 197 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 292
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 197 RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 292
R PS P+ + A A PSPA R PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -2
Query: 550 LGTLNS*LSPMSL-GLSASVHL-THTFGSTAGRRPVSARAAIPRPKSQASCKSLAASVPV 377
LGT+ + S+ +S SV+ + T GST + P S+ + P P + ++ ++ PV
Sbjct: 598 LGTIMTTPGTSSIPSISTSVNSGSSTIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPV 657
Query: 376 TA 371
T+
Sbjct: 658 TS 659
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,762
Number of Sequences: 27780
Number of extensions: 348683
Number of successful extensions: 1200
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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