Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2103
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   2.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.8  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 396 KDLHEACDLGR-GMAALALTGLLPAVLPNVCVKCT 497
           K LH   D G   +    +  LLP VL N C +CT
Sbjct: 35  KQLHCILDRGHCDVIGKKIKELLPEVLNNHCNRCT 69


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 420 LGRGMAALALTGLLPAVLPNVCVKCTDA 503
           +   + A ALTG  P +LP  C+   +A
Sbjct: 467 MAASVVAAALTGTYPTLLPQWCLPPREA 494


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 447 LTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 554
           L  +LP  L   C KCTD  +   I    +F V NK
Sbjct: 64  LKRVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 447 LTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 554
           L  +LP  L   C KCTD  +   I    +F V NK
Sbjct: 64  LKRVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 447 LTGLLPAVLPNVCVKCTDADKPRDIGDSYEFKVPNK 554
           L  +LP  L   C KCTD  +   I    +F V NK
Sbjct: 64  LKRVLPDALATDCKKCTDKQR-EVIKKVIKFLVENK 98


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +3

Query: 327 SLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAALALTGLLPAVLPNVCVKCTDAD 506
           S++ ++SP +  C     G      L + C    G   LAL     A  P +   C    
Sbjct: 6   SMYNNVSPLQ--CTSPFLG---GPQLTDVCSASNGELFLALLNFFVATSPVIGEPCQRVH 60

Query: 507 KPRDIGDSYEFKV 545
             R    SY+F V
Sbjct: 61  SSRIPDLSYDFIV 73


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 392 GVCAGDGVNTRLSERRHVHEQ*QGPERRYSPEDLFAGG 279
           G+ A D     LS R       +GP+   +P +  AGG
Sbjct: 37  GIWADDSDEEELSARPSFKTFDKGPKNYTTPVNFVAGG 74


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 251  SPAARCIPPPRL 286
            +P  RC PPPR+
Sbjct: 1696 APNRRCPPPPRM 1707


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 72   LKLTASTWVNLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 209
            LK +     ++RGL G+ +++  +DF  P   +      F  +Y L
Sbjct: 1584 LKASEDYRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,524
Number of Sequences: 438
Number of extensions: 4723
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)