Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2103
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro... 32 0.38
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai... 30 1.2
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 29 2.7
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 3.5
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 29 3.5
At5g16560.1 68418.m01938 myb family transcription factor (KAN1) ... 29 3.5
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p... 29 3.5
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ... 29 3.5
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ... 29 3.5
At5g53660.1 68418.m06665 expressed protein 28 6.2
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 28 6.2
At4g29540.1 68417.m04213 bacterial transferase hexapeptide repea... 28 6.2
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 6.2
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 27 8.2
>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
protein
Length = 192
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 243 HSHHQLHDASLPPACEQVFGGISPLRTLSLFMDMSPFRQACI 368
H HH HDAS+PP+ + SP + S S AC+
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASASASSAASSLPTACL 176
>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 454
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 138 YDDFRL-PNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQ 293
Y FR P+ K C S S F Y+ CP S H + D LPP EQ
Sbjct: 221 YSQFRSSPSPKCCVSLSAF--YYQNIVPCPTCSCGCSSSHCVKDGELPPYLEQ 271
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGR 428
++ GG L LSL + + F+ A I+ + DAA DL ++GR
Sbjct: 1079 ELSGGQRSLLALSLILALLLFKPAPIYILDEVDAALDLSHTQNIGR 1124
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 291 QVFGGISPLRTLSLFMDMSPFRQACIHAVTGTDAAKDLHEACDLGRGMAA 440
++ GG L LSL + + F+ A ++ + DAA DL ++GR + A
Sbjct: 1082 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIRA 1131
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 238 PNTPITSCTMHPSPPPANRSSGEY 309
P+TP T+C PSPP + S Y
Sbjct: 58 PSTPTTACPPPPSPPSSGGGSSYY 81
>At5g16560.1 68418.m01938 myb family transcription factor (KAN1)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI1 (KAN1) GI:15723590
Length = 403
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 168 ICTSESEFGNAYRLARSCPQVQ-APEHSHH 254
I S S + NAYR +S P+++ P H HH
Sbjct: 147 ILNSSSGYNNAYRSLQSSPRLKGVPLHHHH 176
>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
protein similar to thaumatin-like protein [Arabidopsis
thaliana] GI:2435406; contains Pfam profile PF00314:
Thaumatin family
Length = 193
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 103 FAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAV--HRCKRPNTPITS 258
F V+ +T + T+ G AL SSV TV P V HRCKR T TS
Sbjct: 37 FTVWPGILTANRTLLRG---GGFALASGSSVNLTVSPENVKMHRCKRSTTSHTS 87
>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 509
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 132 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 239
EPY LPNG++ +SE N Y+++ S P
Sbjct: 84 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119
>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 447
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 132 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 239
EPY LPNG++ +SE N Y+++ S P
Sbjct: 22 EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57
>At5g53660.1 68418.m06665 expressed protein
Length = 365
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 403 KSLAASVPVTA*IHACLKGDMSMNNDRVLSGDIPPKTCSQAGGRDASCS 257
K + AS+PV + S N++ ++GD+ P C + G+ C+
Sbjct: 76 KYMIASIPVPFDLLVSSPSSASPCNNKNIAGDLEPGRCRRTDGKKWRCA 124
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 214 AAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRSGP 324
AA ++ P P ++P PPP +++ Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223
>At4g29540.1 68417.m04213 bacterial transferase hexapeptide
repeat-containing protein similar to
UDP-acetylglucosamine acyltransferase [Acinetobacter sp.
M-1] GI:13358850; contains Pfam profile PF00132:
Bacterial transferase hexapeptide (three repeats)
Length = 334
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +1
Query: 259 CTMHPSPPPANRSS-GEYRR-SGPCHCSWTCRLSDKRVF 369
C++H S P++++ G+ G CH + C++ D+ +F
Sbjct: 152 CSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIF 190
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 232 KRPNTPITSCTMHPSPPPANRSS 300
KR +PIT H SPPP R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 226 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRSG 321
R KRP +P+ C P PPP + S R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,003
Number of Sequences: 28952
Number of extensions: 330298
Number of successful extensions: 1100
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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