Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2102
         (500 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    60   4e-11
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    60   4e-11
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    60   4e-11
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    29   0.067
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   7.7  

>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 60.1 bits (139), Expect = 4e-11
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
 Frame = +2

Query: 17  ETEVGERG-LK-LSGGEKQRVGIARAILKDAPLLLHDEATSSLDSLTEHAILQALKA-AT 187
           +T +G  G +K LSGGE++R+  A   L D  LLL DE TS LDS   H++LQ LK  A 
Sbjct: 232 DTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAM 291

Query: 188 VGKTSICIAHRLSTVADA--DEILVLERGAISERGXHHQ 298
            GKT I   H+ S+      D+IL++  G ++  G  +Q
Sbjct: 292 KGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQ 330


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 60.1 bits (139), Expect = 4e-11
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
 Frame = +2

Query: 17  ETEVGERG-LK-LSGGEKQRVGIARAILKDAPLLLHDEATSSLDSLTEHAILQALKA-AT 187
           +T +G  G +K LSGGE++R+  A   L D  LLL DE TS LDS   H++LQ LK  A 
Sbjct: 232 DTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAM 291

Query: 188 VGKTSICIAHRLSTVADA--DEILVLERGAISERGXHHQ 298
            GKT I   H+ S+      D+IL++  G ++  G  +Q
Sbjct: 292 KGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQ 330


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 60.1 bits (139), Expect = 4e-11
 Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
 Frame = +2

Query: 17  ETEVGERG-LK-LSGGEKQRVGIARAILKDAPLLLHDEATSSLDSLTEHAILQALKA-AT 187
           +T +G  G +K LSGGE++R+  A   L D  LLL DE TS LDS   H++LQ LK  A 
Sbjct: 210 DTIIGAPGRIKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAM 269

Query: 188 VGKTSICIAHRLSTVADA--DEILVLERGAISERGXHHQ 298
            GKT I   H+ S+      D+IL++  G ++  G  +Q
Sbjct: 270 KGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQ 308


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 29.5 bits (63), Expect = 0.067
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
 Frame = +2

Query: 8    KGYETEVGERGL------KLSGGEKQRVGIARAIL----KDAPLLLHDEATSSLDSLTEH 157
            KG E +VG  G+      +LSGG++  V ++  +     K APL + DE  ++LD     
Sbjct: 1064 KGLEVKVGFNGMWKESLTELSGGQRSLVALSLILAMLKYKPAPLYILDEVDAALDLSHTQ 1123

Query: 158  AILQALKA 181
             I   LKA
Sbjct: 1124 NIGNMLKA 1131


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 5   PKGYETEVGERGLKLSGGEKQRVG 76
           P+GYE   G +G+    GEK   G
Sbjct: 418 PRGYEGPQGPKGMDGFDGEKGERG 441


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,713
Number of Sequences: 2352
Number of extensions: 5259
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)