Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2102
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.77 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 362 IQVIKNLSRRHXDHMFFFYXP 424
           IQ++ NL RR   H+F  Y P
Sbjct: 203 IQIVFNLRRRLGYHLFHTYIP 223


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +2

Query: 5   PKGYETEVGERGLKLS----GGEKQRVGIARAILKDAPLLLHDEATSSLDSLTEHAILQA 172
           P G+ETE+ ++ L+L      G+  ++ +   +++D   L+ D    + +     +I+  
Sbjct: 83  PDGWETEISDQMLELRDLPISGKPFQIRMKHGLIRD---LIVDRDVPTWEVNILKSIVGQ 139

Query: 173 LKAATVGKTSI 205
           L+  T G+ ++
Sbjct: 140 LQVDTQGENAV 150


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 325 TTSSGRNRTNIPYP 366
           T+ SG+N+   PYP
Sbjct: 85  TSPSGQNKAVAPYP 98


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 325 TTSSGRNRTNIPYP 366
           T+ SG+N+   PYP
Sbjct: 85  TSPSGQNKAVAPYP 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,010
Number of Sequences: 438
Number of extensions: 1433
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)