Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2101
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    52   3e-09
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.1  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   9.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 52.4 bits (120), Expect = 3e-09
 Identities = 29/77 (37%), Positives = 39/77 (50%)
 Frame = +3

Query: 45   TLRCIFHGNPPPKITWRKGEITIDGSEGRTRVLSDGTLEIVSLYRNDTGVYICIAENEFG 224
            TL C+  G PPP ITW+   +    S+ + R   DG+L I  + RN+ G Y C  EN++G
Sbjct: 1325 TLPCLAVGLPPPVITWKIKGVQFTTSD-KIRQQPDGSLFIRDVSRNNAGEYSCHVENDYG 1383

Query: 225  ISQQEIHLQVNDPVRTP 275
                   L VN P   P
Sbjct: 1384 QDSVTHQLIVNAPPHAP 1400



 Score = 49.6 bits (113), Expect = 2e-08
 Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = +3

Query: 9   EPEVNAAEGGK-ATLRCIFHGNPPPKITWRKGEITIDGSEGRTRVLSDGTLEIVSLYRND 185
           EP+V   + G+ AT  C F GNP   I+W K    ID +E          L I S+ + D
Sbjct: 333 EPQVQTIDFGRPATFTCNFEGNPIKTISWLKDGHPIDHNE--------AVLRIESVRKED 384

Query: 186 TGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYPD 365
            G+Y C   N+   ++    L++      P  I    NE  T + G  + L+C+  G P 
Sbjct: 385 KGMYQCFIRNDQESAEATAELKLGGRFEPP-QIRHAFNEE-TVQPGNSVFLKCIASGNPT 442

Query: 366 P 368
           P
Sbjct: 443 P 443



 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
 Frame = +3

Query: 15  EVNAAEGGKATLRCIFHGNPPPKITWRKGEITIDGSEGR-----TRVLSD--GTLEIVSL 173
           E     G    L+CI  GNP P+ITW      +  SE         V  D    L I ++
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAI 481

Query: 174 YRNDTGVYICIAENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRCLVY 353
           + ND G+Y C+A ++ G +     + V      P   + E+  ++    G  L++ C   
Sbjct: 482 HTNDGGLYRCVASSKVGSADHSARINV---YGLPFVRSMEKQAIVA---GGTLIVHCPFA 535

Query: 354 GYP 362
           G+P
Sbjct: 536 GHP 538



 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
 Frame = +3

Query: 9    EPEVNA-AEGGKATLRCIFHGNPPPKITWRKGEITIDGSEGRTRV------LSDGTLEIV 167
            EP   A A+G  A + C   G P P +TW++      G     +       + DGTL I 
Sbjct: 704  EPTDKAFAQGSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKVEDGTLTIN 763

Query: 168  SLYRNDTGVYICIAENEFGIS-QQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRC 344
            ++ + + G Y+C A N  G      I + V  P +  + +  +     T   G P VL+C
Sbjct: 764  NIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQFDIKLRNQ-----TSRRGDPAVLQC 818

Query: 345  LVYG 356
               G
Sbjct: 819  EAKG 822



 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = +3

Query: 42  ATLRCIFHGNPPPKITWRKGEITIDGS-EGRTRVLSDGTLEIVSL----YRND--TGVYI 200
           A + C  HGNP P I W + + T  G   G  +VL++G L         YR +    VY+
Sbjct: 41  AVVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEVHAQVYV 100

Query: 201 CIAENEFG 224
           C+A+N  G
Sbjct: 101 CLAKNSVG 108



 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
 Frame = +3

Query: 48  LRCIFHGNPPPKITWRKGEITIDGSEGRTRV-LSD------GTLEIVSLYRNDTGVYICI 206
           L C   G P P   W K    ++G+  +  V L+D      GTL I      D+G Y+C+
Sbjct: 252 LLCPAQGFPSPSFRWYK---FVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCV 308

Query: 207 AENEFGISQQEIHLQVNDPVRTPVGIAGEQNEVITGEMGRPLVLRCLVYGYP 362
             N  G    E  L V  P++  +     + +V T + GRP    C   G P
Sbjct: 309 VNNSVGGESVETVLTVTAPLKAKI-----EPQVQTIDFGRPATFTCNFEGNP 355



 Score = 37.9 bits (84), Expect = 6e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +3

Query: 33   GGKATLRCIFHGNPPPKITWRKGEITIDGSEG-----RTRVLSDGTLEIVSLYR---NDT 188
            G  A L+C   G  P  I W      ++         R  +L++G L  +S+ R   +D+
Sbjct: 811  GDPAVLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDS 870

Query: 189  GVYICIAENEFGISQQEIHLQVNDPVRTPVGI 284
             ++ C+A N FG     I++ V +    P G+
Sbjct: 871  ALFTCVATNAFGSDDTSINMIVQEVPEVPYGL 902



 Score = 37.5 bits (83), Expect = 8e-05
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 33  GGKATLRCIFHGNPPPKITWRKGEITIDGSEGRTRVLSDGTLEIVSLYR-NDTGVYICIA 209
           GG   + C F G+P   + W +    +  +  + +V  +GTL I ++ R +D   Y C+A
Sbjct: 525 GGTLIVHCPFAGHPVDSVVWERDGRQLPINR-KQKVFINGTLIIENVERASDQATYDCVA 583

Query: 210 ENEFGISQQ-EIHLQVNDP 263
           +N  G S +  + +QV  P
Sbjct: 584 KNSQGYSARGSLEVQVMVP 602



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 346 SCTDTPTPEIFWYR 387
           S    PTP+I W R
Sbjct: 46  SAHGNPTPDIIWVR 59


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 158 QRAVRQHARPALAAVDSDFSFPPSDLGRRVPV 63
           QR     ++ ALA+V  DF F P++   R PV
Sbjct: 440 QRFALLVSKVALASVVKDFVFDPTE---RTPV 468


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 EGRTRVLSDGTLEIVSLYRNDT 188
           EGR RV++DG   +++  R  T
Sbjct: 197 EGRFRVINDGIQALINDSRKVT 218


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 402 HGAIQQYIVRSQRKRSXNKTTDRRGARGIXVSSIQRKRKP 521
           H ++  Y   +QRK+   +TT  R    +  +   + R P
Sbjct: 55  HSSMAGYPAGNQRKQRRERTTFTRAQLDVLEALFGKTRYP 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,702
Number of Sequences: 336
Number of extensions: 2961
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)