Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2101
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   0.79 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   2.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    27   2.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   5.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   9.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   9.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   9.7  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -1

Query: 232 WLMPNSFSAMQM*TPV---SFRYSDTISSVPSDSTRVRPSLPSIVISPFLQVILGGGFPW 62
           +L P  F +    T +   S   SD + S+P  ++ + PSLP IV+      ++ G F W
Sbjct: 796 YLKPQEFGSSSSLTVIPMPSNESSDLVFSIPGITSWLDPSLPVIVLIANYLGLMDGPF-W 854

Query: 61  NIQR 50
           N  R
Sbjct: 855 NTIR 858


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 321 GRPLVLRCLVYGYPD 365
           GRP  + CLVYG+P+
Sbjct: 52  GRPWSISCLVYGFPN 66


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = -1

Query: 313 PVITSFCSPAMPTGVLTGSFTCRWISCWLMPNSFSAMQM*TPVSFRYSDTISSV--PSDS 140
           P +TSF  P    GV + +      S  + P+  + +     +S +  +   S+  PS+ 
Sbjct: 36  PQLTSFTKPTATNGVDSPT------SSHIDPSVSAKLDSQRKLSLKSGNMWDSLNAPSEL 89

Query: 139 TRVRPSLPSIVISPFLQVILGGGFPWNIQRSVAFPPSAAF 20
           T   P++ S   S    ++  GG P+     VA  PS+ F
Sbjct: 90  TSKNPTVSSTTSSANPAIVSNGGSPFYKNPVVANNPSSTF 129


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 274 GVLTGSFTCRWISCWLMPNSFSAMQM*TP-VSFRYSDTISSVPSDS 140
           GV+T    C WI   ++ N  +A++   P V + Y+ TI + PS S
Sbjct: 196 GVITTQAECMWIHLGVISNVLTAVKTVFPNVRYAYT-TIPTYPSGS 240


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 48  LRCIFHGNPPPKITWRKGEITIDGSEGRT-RVLSDGTLEIVSLYRNDTGVYICIA 209
           L C+ H      I+W K +  +  S  RT R+    + + ++++R++  +  C+A
Sbjct: 249 LECVGHNAEVLSISWSKNDFLLTSSADRTVRLWHPKSTKSLAVFRHNE-IVTCVA 302


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 61   STGTRRPRSLGGKEKS 108
            STGTR+PR++ G   S
Sbjct: 1235 STGTRKPRAIAGSSSS 1250


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 353 RIPRPRKSSGTEDLTVPWCHTAVHCT 430
           R PRP   +GT+    PW H   HC+
Sbjct: 318 RFPRPVPHNGTKPDHKPWKHEE-HCS 342


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 RTRVLSDGTLEIVSLYRNDTGVYICIAENEFGISQQE 239
           R  + +D   EIV LYR   G+ + I   + G+ + E
Sbjct: 591 RNVLTNDLVKEIVELYRVYAGIDVAIGTLQLGLKRME 627


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 111 IDGSEGRTRVLSDGTLEIVSL 173
           IDG   RT+ +  GTL +V L
Sbjct: 702 IDGENSRTKQICKGTLNLVDL 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,086
Number of Sequences: 5004
Number of extensions: 46613
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)