Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2101
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    27   0.41 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    25   2.2  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   2.9  
Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.           23   6.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   6.6  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   6.6  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.6  
Z22930-7|CAA80512.1|  274|Anopheles gambiae trypsin protein.           23   8.8  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.8  
AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol ...    23   8.8  

>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 461 CLIXRTFSLASYNVLLYGTMGPLSPLYQ 378
           C I + F L  YN LLY     LSP YQ
Sbjct: 9   CAIAKVFELVIYNNLLYACRSYLSP-YQ 35


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 257 RSGEDAGRHRGRTKRSNNGGDG 322
           R G   GR RGR +   +GG G
Sbjct: 72  RGGRGGGRGRGRGRGGRDGGGG 93


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 262 GSFTCRWISCWLMP 221
           G F   W SCWL P
Sbjct: 520 GVFPALWKSCWLFP 533


>Z18889-1|CAA79327.1|  274|Anopheles gambiae trypsin protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 368 RKSSGTEDLTVPWCHTAVHCTKPEKT 445
           R + G   L+  W  TA HCT    T
Sbjct: 70  RHNCGGSVLSSKWVLTAAHCTAGRST 95


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 293 TKRSNNGGDGQTARLALPRVRIPRPRKSSGT 385
           T  ++NGG G  A        IP+P  SS T
Sbjct: 401 TNGASNGGSGAPATAKPTPKPIPKPAPSSET 431


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 293 TKRSNNGGDGQTARLALPRVRIPRPRKSSGT 385
           T  ++NGG G  A        IP+P  SS T
Sbjct: 401 TNGASNGGSGAPATAKPTPKPIPKPAPSSET 431


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 230  PAGDP-PASERSGEDAGRHRGRTKRSNNGGDGQTARLALPRVRIPRPRKSSGTEDLTVP 403
            PA  P PA   S +        T  +  GG  +T  +A     +P    SSGT    +P
Sbjct: 947  PATAPAPAKTTSTDSTNGLETPTSETVGGGMHRTPTVASMMTFMPAAGSSSGTATTRIP 1005


>Z22930-7|CAA80512.1|  274|Anopheles gambiae trypsin protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 368 RKSSGTEDLTVPWCHTAVHCTKPEKT 445
           R + G   L+  W  TA HCT    T
Sbjct: 70  RHNCGGSVLSSKWVLTAAHCTAGAST 95


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 461 CLIXRTFSLASYNVLLYGTMGPLSPLYQ 378
           C I + F L  Y  LL+     LSP YQ
Sbjct: 624 CAIAKVFELVIYKNLLHACRSYLSP-YQ 650


>AJ439353-7|CAD27929.1|  555|Anopheles gambiae putative glycerol
           kinase protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 340 RKTSGLPISPVITSFCSPAMPTGVLTGSFTCRWISCW 230
           R  SGLPISP  ++     +   V+     CR   C+
Sbjct: 136 RALSGLPISPYFSALKLNWLKDNVVAVRKACRERRCY 172


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,736
Number of Sequences: 2352
Number of extensions: 13095
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)