Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2101
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08810.1 68417.m01450 expressed protein                             29   1.5  
At5g24070.1 68418.m02827 peroxidase family protein similar to ca...    29   2.7  
At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative ...    29   2.7  
At1g10000.1 68414.m01128 expressed protein                             29   2.7  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    28   4.7  
At3g11690.1 68416.m01433 expressed protein                             28   4.7  
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica...    28   4.7  
At3g18040.2 68416.m02295 mitogen-activated protein kinase, putat...    27   8.3  
At3g18040.1 68416.m02294 mitogen-activated protein kinase, putat...    27   8.3  
At3g10510.1 68416.m01261 kelch repeat-containing F-box family pr...    27   8.3  

>At4g08810.1 68417.m01450 expressed protein
          Length = 552

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 325 DRSSCAASCTDTPTPEIFWYRGLNGPMVPYSSTLYEARENVLXIRQLIDEALGE 486
           D+S+      DTP PE +WYR   G    Y    + A      +  ++ E  G+
Sbjct: 362 DKSTIIWRQFDTPEPENYWYRVCEGQASKYVERPWHALWKSKRLMNIVSEISGK 415


>At5g24070.1 68418.m02827 peroxidase family protein similar to
           cationic peroxidase, Peanut [Arachis hypogaea]
           GP|166475|gb|AAA32676; contains Pfam profile PF00141:
           Peroxidase
          Length = 340

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 36  GKATLRCIFHGNPPPKITWRKGEITIDGSEGRTRVLSDGTLEIVSLYRNDTGV 194
           GKAT+      NPP K+ W   ++T    +  T +      ++   Y+ND+ +
Sbjct: 19  GKATVEAATGLNPPVKLVWHYYKLTNTCDDAETYI----RYQVEKFYKNDSSI 67


>At1g76880.1 68414.m08946 trihelix DNA-binding protein, putative
           similar to DNA-binding protein DF1 [Pisum sativum]
           GI:13646986
          Length = 603

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 172 SDTISSVPSDSTRVRPSLPSIVISPFLQVILGGGFP 65
           + +I S P   T V P+LPS  I P+ Q I    FP
Sbjct: 178 NSSIFSTPPPVTTVMPTLPSSSIPPYTQQINVPSFP 213


>At1g10000.1 68414.m01128 expressed protein
          Length = 303

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 323 QTARLALPRVRIPRPRKSSGT 385
           Q+A+LALP+VR+  PR +S T
Sbjct: 134 QSAQLALPKVRVATPRPNSTT 154


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1225

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 434 ASYNVLLYGTMGPLSPLYQKISGVGVSVHEAAQDERSAHLPRYYFVLF 291
           A Y  L     G + P+Y   SG  VSV+  A  ++     R Y +LF
Sbjct: 657 ALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLF 704


>At3g11690.1 68416.m01433 expressed protein
          Length = 252

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 172 SDTISSVPSDSTRVRPSLPSIVISPFLQVILGGGFP 65
           SDT SS PS S R +P L   + SP  +   GG  P
Sbjct: 19  SDTPSSSPSRSNRRQPLLQRSLSSPSPRASCGGSTP 54


>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
           to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
           GI:21427461; contains Pfam profile PF00022: Actin
          Length = 427

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = -2

Query: 447 NVFSGFVQCTAVWHHGTVKSSVPEDF 370
           NV S  VQ  AVW  G+V SS PE F
Sbjct: 375 NVVSHPVQRFAVWFGGSVLSSTPEFF 400


>At3g18040.2 68416.m02295 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
           thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to blast
           and wounding induced mitogen-activated protein kinase
           (BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 299 RSNNGGDGQTARLALPRVRIPRPRKSSGTED 391
           +   G   Q    +LPR R+P P+K +G+ +
Sbjct: 308 KGEKGSPLQRQHASLPRERVPAPKKENGSHN 338


>At3g18040.1 68416.m02294 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
           thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to blast
           and wounding induced mitogen-activated protein kinase
           (BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 510

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 299 RSNNGGDGQTARLALPRVRIPRPRKSSGTED 391
           +   G   Q    +LPR R+P P+K +G+ +
Sbjct: 396 KGEKGSPLQRQHASLPRERVPAPKKENGSHN 426


>At3g10510.1 68416.m01261 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 371

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 127 PSLPSIVISPFLQVILGGGFPWNIQRSVAFPPSA 26
           P+  S V+      ++GG + WN++   A PPS+
Sbjct: 112 PTAASYVVVGSNIFVMGGRYDWNVEEWEAQPPSS 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,997
Number of Sequences: 28952
Number of extensions: 272112
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)