Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2100
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    53   3e-08
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    42   4e-05
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    38   7e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    36   0.004
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    30   0.23 
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    29   0.31 
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    29   0.40 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    27   1.2  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   1.6  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    26   3.8  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   5.0  
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    25   6.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.7  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
 Frame = +2

Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKAXRRRPALQRVSSMPFRPYPQGAGSSF 412
           F+ GG+SAAVSKTA APIERVKLL+Q Q  + +A R     + +     R   +    S 
Sbjct: 31  FMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISL 90

Query: 413 IXGXVTFANVIRYFP 457
             G    ANV+RYFP
Sbjct: 91  WRGNT--ANVLRYFP 103



 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 25/52 (48%), Positives = 31/52 (59%)
 Frame = +3

Query: 351 RYKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
           RYKG   C F R   E+G+        +   L  FPTQALNFAFKDK+K++F
Sbjct: 70  RYKGIGEC-FKRTAAEEGVISLWRG-NTANVLRYFPTQALNFAFKDKFKKMF 119


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 17/32 (53%), Positives = 28/32 (87%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQH 322
           L + L+GG++A VS+TAV+P+ER+K++ QVQ+
Sbjct: 21  LISMLSGGVAATVSRTAVSPLERMKIIFQVQN 52


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVS 328
           +++ +AGG +  V+K+ VAP++RVK+L Q  H S
Sbjct: 18  VKSGIAGGTAGCVAKSVVAPLDRVKILYQTNHAS 51


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +2

Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYPQGAGSSFI 415
           F++GGI+  VS+T  AP++R+K++L     SK   + P    + +        G  S F+
Sbjct: 131 FISGGIAGIVSRTCTAPLDRLKVMLISDTGSKPSPKYPFATLLHTTKVLWNRNGIRSFFV 190

Query: 416 XGXVTFANVIRYFPD 460
              +   NV++  P+
Sbjct: 191 GNGI---NVLKVMPE 202



 Score = 28.3 bits (60), Expect = 0.71
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 331
           L ++LAGG++ +V++  + P++ +K  +Q   +S+
Sbjct: 229 LYSYLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR 263


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 176 IT*SNKMSNPRRSGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQ 313
           +T +N  SN R    +S   F+AGG++  +   A AP++ VK  LQ
Sbjct: 34  LTKANNASNERAPPPLS--HFIAGGVAGMLGAIATAPLDVVKTRLQ 77


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYPQGAGSSFIX 418
           ++GG+S A++ +   P++ VK LLQ +  S     R     +  + F  Y  G   SF  
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRGSSSIPEVRKCKGSLDVVRF-IYNYGGIPSFFK 267

Query: 419 G 421
           G
Sbjct: 268 G 268


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQHVS 328
           LAGGIS+ + +  +AP + +K+ +Q+   S
Sbjct: 21  LAGGISSVICRFMIAPFDVIKIRMQITQSS 50


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQ 319
           +++G IS   +   V P+E V++ LQ+Q
Sbjct: 116 YVSGAISGLANSFLVGPVEHVRIRLQIQ 143


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 224 SLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
           SL+  +AGG +   S   VAP++ VK   Q Q
Sbjct: 5   SLKDAIAGGAAGLASSLVVAPLDVVKTRKQAQ 36


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +2

Query: 95  KNQELVFRDPPSACAELPTSTYSP*WKIT*SNKMSNPRRSGRVSLRTFL 241
           K  E + RDPP      PT      +KIT      +    G+  L  FL
Sbjct: 9   KEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFL 57


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQ 319
           FL+GG++A  + T   P E +K   Q+Q
Sbjct: 27  FLSGGLAACGAVTLTNPFEVIKTRFQLQ 54


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 224 SLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSK 331
           ++ TFL G ++  ++     PI+ VK  +Q    SK
Sbjct: 203 TVTTFLVGSVAGIITVYCTQPIDTVKSRMQSLSASK 238


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 123 PHPRVPNFPPRHIHPSGRSHNRTKCRTLADPVAF 224
           P P  P+ PPR + P     N    +T  +P++F
Sbjct: 633 PRPATPSNPPRSLPPPSGQVNAPMSQT-PNPISF 665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,456
Number of Sequences: 5004
Number of extensions: 31746
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)