Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2100
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 58 4e-09
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 52 3e-07
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 44 5e-05
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 44 7e-05
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 43 2e-04
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 42 2e-04
01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536... 42 4e-04
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 40 9e-04
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 40 0.001
07_03_0117 + 13589997-13590998 40 0.002
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 39 0.002
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 37 0.011
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902... 36 0.014
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235... 34 0.058
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 33 0.13
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 33 0.18
02_01_0768 + 5736778-5737341,5737451-5737612,5738678-5738707 33 0.18
03_02_0148 - 5928703-5928931,5929099-5929171,5929288-5929408,592... 32 0.23
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 31 0.41
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 31 0.71
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 30 0.94
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 29 2.2
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 29 2.2
03_02_0760 + 10960381-10960461,10960740-10961003,10961334-109616... 28 5.0
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 27 8.8
02_05_0310 + 27769988-27770830 27 8.8
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191... 27 8.8
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 58.0 bits (134), Expect = 4e-09
Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 209 RSGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKAXRRRPALQRVSSMPFRP 385
+ G+ + FL GG+SAAVSKTA APIERVKLL+Q Q + KA R + + R
Sbjct: 77 KGGKNFMIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRT 136
Query: 386 YPQGAGSSFIXGXVTFANVIRYFP 457
+S G ANVIRYFP
Sbjct: 137 IKDEGFASLWRGNT--ANVIRYFP 158
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +3
Query: 354 YKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
YKG C F R K++G + + FPTQALNFAFKD +K++F
Sbjct: 126 YKGIGDC-FGRTIKDEGFASLWRG-NTANVIRYFPTQALNFAFKDYFKRLF 174
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKAXRRRPALQRVSSMPFRPYPQGAGSSF 412
F+ GG+SAAVSKTA APIER+KLL+Q Q + K+ R + ++ R +
Sbjct: 84 FMMGGVSAAVSKTAAAPIERIKLLIQNQDEMIKSGRLSHPYKGIADCFGRTIKDEGVIAL 143
Query: 413 IXGXVTFANVIRYFP 457
G ANVIRYFP
Sbjct: 144 WRGNT--ANVIRYFP 156
Score = 40.3 bits (90), Expect = 9e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 354 YKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
YKG C F R K++G+ + + FPTQALNFAFKD +K++F
Sbjct: 124 YKGIADC-FGRTIKDEGVIALWRG-NTANVIRYFPTQALNFAFKDHFKRMF 172
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 44.4 bits (100), Expect = 5e-05
Identities = 18/31 (58%), Positives = 27/31 (87%)
Frame = +2
Query: 230 RTFLAGGISAAVSKTAVAPIERVKLLLQVQH 322
++ AGG++ VS+TAVAP+ER+K+LLQVQ+
Sbjct: 45 KSLFAGGVAGGVSRTAVAPLERMKILLQVQN 75
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 44.0 bits (99), Expect = 7e-05
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +2
Query: 218 RVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYPQG 397
R + F GG +A V+KT AP+ERVKLLLQ Q RR +L R P+R
Sbjct: 22 RAAAADFAMGGAAAVVAKTGAAPVERVKLLLQNQ---AEMLRRGSLTR----PYRGIADA 74
Query: 398 AGSSFIXGXVTF------ANVIRYFP 457
G V ANVIRYFP
Sbjct: 75 FGRVLREEGVAALWRGNQANVIRYFP 100
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 378 FVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
F R+ +E+G+ + FPTQA NFAFK +K +F
Sbjct: 75 FGRVLREEGVAALWRG-NQANVIRYFPTQAFNFAFKGYFKSIF 116
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQ--HVSKAXRRRPALQRVSSMPFRPYPQGAGSSF 412
LAGG++ AVSKT AP+ R+ +L QVQ H A R+ ++ R +S Y +G + +
Sbjct: 41 LAGGVAGAVSKTCTAPLARLTILFQVQGMHSDVATMRKTSIWREASRIV--YEEGFRAFW 98
Query: 413 IXGXVTFANVIRY 451
VT A+ + Y
Sbjct: 99 KGNLVTIAHRLPY 111
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Frame = +2
Query: 221 VSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
+++R +AGG++ V+KTAVAP+ERVK+L Q +
Sbjct: 24 LAVRELVAGGVAGGVAKTAVAPLERVKILFQAR 56
>01_06_0447 +
29452194-29452361,29453232-29453317,29453403-29453610,
29454252-29454381,29454561-29454745,29454858-29454989,
29455747-29455851
Length = 337
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = +2
Query: 221 VSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
V + +AGG++ A SKTA+AP+ER+K+LLQ +
Sbjct: 26 VFAKEMIAGGVAGAFSKTAIAPLERLKILLQTR 58
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 221 VSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
V + +AGG + A +KTAVAP+ERVK+LLQ +
Sbjct: 28 VYAKELIAGGAAGAFAKTAVAPLERVKILLQTR 60
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/27 (55%), Positives = 24/27 (88%)
Frame = +2
Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQ 319
+AGG+S A S+TA AP++R+K+++QVQ
Sbjct: 238 IAGGVSGATSRTATAPLDRLKVIMQVQ 264
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 239 LAGGISAAVSKTAVAPIERVKLLLQ 313
+AGG++ AV++TA+ PI+ VK LQ
Sbjct: 333 MAGGLAGAVAQTAIYPIDLVKTRLQ 357
>07_03_0117 + 13589997-13590998
Length = 333
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +2
Query: 230 RTFLAGGISAAVSKTAVAPIERVKLLLQV 316
R +AGG++ V+KTAVAP+ERV L+ QV
Sbjct: 43 REMVAGGVAGVVAKTAVAPLERVNLMRQV 71
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/27 (55%), Positives = 24/27 (88%)
Frame = +2
Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQ 319
+AGGI+ A S+TA AP++R+K+++QVQ
Sbjct: 237 IAGGIAGAASRTATAPLDRLKVIMQVQ 263
Score = 30.3 bits (65), Expect = 0.94
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 239 LAGGISAAVSKTAVAPIERVKLLLQ 313
+AGG++ AV++TA+ P++ VK LQ
Sbjct: 332 VAGGLAGAVAQTAIYPVDLVKTRLQ 356
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 36.7 bits (81), Expect = 0.011
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 215 GRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQV 316
G L+ ++GGI+ AVS+TAVAP+E ++ L V
Sbjct: 131 GNPHLKRLISGGIAGAVSRTAVAPLETIRTHLMV 164
>01_01_1139 -
9024609-9024708,9024832-9024910,9025083-9025252,
9025339-9025451,9025518-9025586,9025867-9025944,
9026022-9026084,9026590-9026670,9027166-9027222,
9027352-9027705
Length = 387
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQHV 325
F AG + AV+KT AP++RVKLL+Q V
Sbjct: 93 FAAGAAAGAVAKTITAPLDRVKLLMQTHSV 122
>01_01_0282 -
2349336-2349583,2349719-2349786,2349880-2349950,
2350022-2350123,2350309-2350449,2350540-2350716,
2352228-2352338
Length = 305
Score = 34.3 bits (75), Expect = 0.058
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 242 AGGISAAVSKTAVAPIERVKLLLQV--QHVSKAXRRRPALQRVSSMPFRPYPQGAGSSFI 415
AGG + AVSKT AP+ R+ +L QV H A ++ ++ +S R +G G+ +
Sbjct: 14 AGGFAGAVSKTCTAPLARLTILFQVAGMHSDVAALKKYSIWHEASRIVR--EEGFGAFWK 71
Query: 416 XGXVTFANVIRY 451
VT + + Y
Sbjct: 72 GNLVTIVHRLPY 83
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 215 GRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQV 316
G LR ++G ++ AVS+T VAP+E ++ L V
Sbjct: 133 GNPHLRRLVSGAVAGAVSRTCVAPLETIRTHLMV 166
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 230 RTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
R +AG T VAPIER KLLLQ Q
Sbjct: 50 RDLVAGAAMGGAVHTVVAPIERAKLLLQTQ 79
>02_01_0768 + 5736778-5737341,5737451-5737612,5738678-5738707
Length = 251
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 215 GRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQV 316
G LR ++G I+ AVS+T VAP+E ++ L V
Sbjct: 124 GNPHLRRLVSGAIAGAVSRTFVAPLETIRTHLMV 157
>03_02_0148 -
5928703-5928931,5929099-5929171,5929288-5929408,
5929907-5929952,5930361-5930571,5930837-5930986,
5931122-5931179,5931285-5931400,5931986-5932091
Length = 369
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +2
Query: 197 SNPRRSGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMP 376
SNP SG S F+AGGI + P E +K +QVQ K+ +S P
Sbjct: 127 SNPNLSGHWS--HFIAGGIGDTLGSFIYVPCEVMKQRMQVQGTKKSWALTATKGNISQTP 184
Query: 377 FRP 385
P
Sbjct: 185 GAP 187
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 218 RVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
R +L LAG IS +S+T +P++ +K+ QVQ
Sbjct: 11 RRALVDALAGAISGGISRTVTSPLDVIKIRFQVQ 44
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 30.7 bits (66), Expect = 0.71
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 242 AGGISAAVSKTAVAPIERVKL 304
+G ++A VS+T VAP+ER+KL
Sbjct: 133 SGAVAAMVSRTVVAPLERLKL 153
>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 30.3 bits (65), Expect = 0.94
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +2
Query: 203 PRRSGRVSLRTFLAGGISAAVSKTAVAPI---ERVKLLLQVQHVSKAXRRRPALQRVSSM 373
P RS S +++ G +SA + +P E + L +Q +S ++PA + VSS
Sbjct: 1030 PNRSSNAS-QSWFNGALSALLDSVPSSPAMAAENIGLNRTLQRISSFRSQQPAREEVSST 1088
Query: 374 PFRPYPQGAGSSFIXGXVTFANVIRYFPDPGA 469
+G G FI V ++ F + A
Sbjct: 1089 LINTRRRGGGLIFISLMVLLVAIMWTFSNGSA 1120
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVS 328
L++ LAGG+++A+S + + PI+ +K +Q +S
Sbjct: 376 LKSALAGGLASALSTSVMHPIDSMKTRVQASSLS 409
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +2
Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVS 328
L++ LAGG+++A+S + + PI+ +K +Q +S
Sbjct: 385 LKSALAGGLASALSTSVMHPIDSMKTRVQASSLS 418
>03_02_0760 +
10960381-10960461,10960740-10961003,10961334-10961619,
10961637-10962394
Length = 462
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 254 SAAVSKTAVAPIERVKLLLQVQHVSKAXR---RRPALQRVSSMPFRPYPQGAGSSFIXGX 424
SA S+ VA + + LL+V+ + R RR QR P P+G G G
Sbjct: 32 SAEQSRAEVAERNKRRRLLEVKAELRRGREEERRGEKQRREEEPTM-VPRGRGREMQGGP 90
Query: 425 VTFANVIRYFPDP 463
+T R+F DP
Sbjct: 91 LTLERYHRFFVDP 103
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 212 SGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYP 391
+ R SL LAGG++ + S +AVA + + + ++ R+R L+ S+ P P
Sbjct: 3 AARASL--LLAGGLAVSTSTSAVATAAQTVSIPHLSPHTRRRRQRRFLRLASAAASSPPP 60
Query: 392 QGAGSS 409
A S+
Sbjct: 61 LPAASA 66
>02_05_0310 + 27769988-27770830
Length = 280
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 129 PRVPNFPPRHIHPSGRS 179
P P PPRH HPS R+
Sbjct: 261 PPAPRTPPRHRHPSPRA 277
>01_02_0070 -
10817675-10818024,10818228-10818893,10819094-10819124,
10820038-10820164,10820279-10820736
Length = 543
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 206 RRSGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRP 349
RR G+ S R GG +AA +++ P+ V+ H+S RR P
Sbjct: 95 RRQGKWSHRG-CGGGGAAASGASSLLPLPPVRSSCSASHISPNPRRSP 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,819
Number of Sequences: 37544
Number of extensions: 256686
Number of successful extensions: 640
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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