Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2100
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   2e-06
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)             42   2e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)                   33   0.18 
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       32   0.32 
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)                31   0.42 
SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)                 30   1.3  
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   1.7  
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)                    29   1.7  
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)             29   2.2  
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)                   29   2.9  
SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   5.1  
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)                     27   9.0  
SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)                      27   9.0  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 37/92 (40%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKAXRRRPALQRVSSMPFRPYPQGAG 403
           +  F   G +A +SKTA APIERVKLL+Q Q  + KA R     + V     R Y     
Sbjct: 10  VENFGLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGF 69

Query: 404 SSFIXGXVTFANVIRYFPDPGA*LRL*GQVQA 499
            SF  G    AN IRYFP          QV+A
Sbjct: 70  LSFWRG--NLANCIRYFPTQALNFAFKDQVKA 99



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +3

Query: 345 DQRYKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
           D  YKG   C   R  + +G   F     +   +  FPTQALNFAFKD+ K +F
Sbjct: 50  DHPYKGVIDCTS-RTYRSEGFLSFWRGNLA-NCIRYFPTQALNFAFKDQVKALF 101


>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/27 (70%), Positives = 26/27 (96%)
 Frame = +2

Query: 239 LAGGISAAVSKTAVAPIERVKLLLQVQ 319
           LAGGI+ AVS+T+V+P+ERVK+LLQ+Q
Sbjct: 39  LAGGIAGAVSRTSVSPLERVKILLQIQ 65


>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
          Length = 76

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKAXRRRPALQRVSSMPFRPY-PQGA 400
           +  F   G +A +SKTA APIERVKLL+Q Q  + KA R     + V     R Y  +G 
Sbjct: 11  VENFALSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGI 70

Query: 401 GS 406
           GS
Sbjct: 71  GS 72


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 245 GGISAAVSKTAVAPIERVKLLLQVQ 319
           GG  A VS+TA AP++R+K+LLQVQ
Sbjct: 143 GGALAGVSRTATAPLDRLKVLLQVQ 167


>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 375

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 194 MSNPRRSGRVS-LRTFLAGGISAAVSKTAVAPIERVKLLLQV 316
           M N     R++  ++FL GG SA ++++  +P+E VK+L QV
Sbjct: 47  MVNTAFDARITWFQSFLCGGTSAVLARSLTSPLEVVKVLAQV 88



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 233 TFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKA 334
           + LAG  S  ++   V P E +K  L VQHV+K+
Sbjct: 155 SMLAGTSSTLIAMVTVYPCEVIKTRLTVQHVNKS 188


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 102 RS*CFVIPHPRVPNFPPRHIHPSGRSHNRTKCRTLADP 215
           R  C +IP   VPN   R IH    S  +T  R  ADP
Sbjct: 270 RDECVIIPDALVPNLTDRAIHRQTTSDGKTLVRLHADP 307


>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
          Length = 114

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 248 GISAAVSKTAVAPIERVKLLLQVQH 322
           G+S   +KT  AP+ER+K+L Q Q+
Sbjct: 63  GLSTCCAKTTTAPLERLKILFQAQN 87


>SB_6736| Best HMM Match : efhand (HMM E-Value=2.6e-21)
          Length = 198

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 242 AGGISAAVSKTAVAPIERVKLLLQ 313
           AGG++   S+T  AP+E++K++ Q
Sbjct: 175 AGGVAGVASRTLTAPLEKMKIIAQ 198


>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 191 KMSNPRRSGRVSLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKA 334
           K+ NP +   V + +   G +S  +SK  + P + +K  +QVQ   +A
Sbjct: 19  KVHNPYKPADV-IESLTCGALSGMISKAVILPFDIIKKRIQVQGFEEA 65


>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 611

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYPQGAGS 406
           +R F +GGI+  +S     P++ VK   Q    + + + +      +    + Y  G  S
Sbjct: 358 IRLFFSGGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVS 417

Query: 407 SFIXGXVTFANVIRYFPDPGA 469
           +F  G    A ++R FP   A
Sbjct: 418 AF--GQGLLATILRGFPTNAA 436


>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 276

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 236 FLAGGISAAVSKTAVAPIERVKLLLQVQ 319
           F + GI+A++++ A  PI+  K+ LQ+Q
Sbjct: 18  FCSAGIAASIAEAATIPIDTAKVRLQIQ 45


>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
          Length = 233

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 224 SLRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFRPYPQGAG 403
           ++R FLAGG ++ V +T   P++ +   L +Q       R+  L+    +    + Q   
Sbjct: 105 TIRGFLAGGCASIVGQTITVPVDIISQKLMIQGQGD---RKVKLKGARILIRETFHQHGP 161

Query: 404 SSFIXGXVTFANVIRYFP 457
             F  G   FA+++ Y P
Sbjct: 162 GGFYKGY--FASLMTYAP 177


>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 328

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQ 319
           LR+  AG I+   +   + P++RVK +LQ++
Sbjct: 138 LRSLAAGMIAGVATSFVLTPLDRVKCILQIE 168


>SB_43997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
 Frame = +2

Query: 125  PSACAELPTSTYSP*WKIT*SNKMS-NPRRSGRVSLRTFLAGGISAAVSKTAVAPIERVK 301
            P  CAE   +  SP  K      +   P R  RV ++T  +   +   +K  +    R  
Sbjct: 915  PYYCAECQINVQSPLTKTNLEVYLECEPLRESRVRIKTIFSAMHATVATKYKINHATRAT 974

Query: 302  LLLQVQHVSKAXRRRPALQRVSSMPFRPYPQGAGSSFI 415
            +    +   +     P  +R++     P+P   GSS +
Sbjct: 975  VATSTRFTMRCTLPWPPNKRLTMRCTLPWPHARGSSVL 1012


>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 313

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 227 LRTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRP 349
           L+   AG  +   +   +AP ER+K LLQ+  + KA    P
Sbjct: 127 LQIMNAGAFAGVCTTAIMAPGERIKCLLQILALQKAKTEFP 167


>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 224 SLRTFLAGGISAAVSKTAVAPIERVKLLLQV 316
           +++TFL GG++ A S     P++ VK  +Q+
Sbjct: 235 AVKTFLIGGVAGAASVFGNTPVDVVKTRMQL 265


>SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)
          Length = 203

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 129 DGGSRNTNS*FXNQEIWSNFRNH 61
           D      NS F N EIW NF N+
Sbjct: 176 DSSDTGKNSDFPNLEIWENFGNY 198


>SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)
          Length = 203

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 129 DGGSRNTNS*FXNQEIWSNFRNH 61
           D      NS F N EIW NF N+
Sbjct: 176 DSSDTGKNSDFPNLEIWENFGNY 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,577
Number of Sequences: 59808
Number of extensions: 263018
Number of successful extensions: 488
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)