Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2100
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    68   5e-14
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    68   5e-14
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 68.1 bits (159), Expect = 5e-14
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = +2

Query: 230 RTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFR-PYPQGAGS 406
           + FLAGG++AA+SKT VAPIERVKLLLQVQH+SK        + +     R P  QG   
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGF-L 70

Query: 407 SFIXGXVTFANVIRYFP 457
           S+  G    ANVIRYFP
Sbjct: 71  SYWRG--NLANVIRYFP 85



 Score = 65.3 bits (152), Expect = 3e-13
 Identities = 35/60 (58%), Positives = 41/60 (68%)
 Frame = +3

Query: 327 AKXIAADQRYKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
           +K I+ +QRYKG   C FVRIPKEQG   +     +   +  FPTQALNFAFKDKYKQVF
Sbjct: 44  SKQISEEQRYKGMIDC-FVRIPKEQGFLSYWRGNLANV-IRYFPTQALNFAFKDKYKQVF 101


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 68.1 bits (159), Expect = 5e-14
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = +2

Query: 230 RTFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKAXRRRPALQRVSSMPFR-PYPQGAGS 406
           + FLAGG++AA+SKT VAPIERVKLLLQVQH+SK        + +     R P  QG   
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGF-L 70

Query: 407 SFIXGXVTFANVIRYFP 457
           S+  G    ANVIRYFP
Sbjct: 71  SYWRG--NLANVIRYFP 85



 Score = 65.3 bits (152), Expect = 3e-13
 Identities = 35/60 (58%), Positives = 41/60 (68%)
 Frame = +3

Query: 327 AKXIAADQRYKGYRRCPFVRIPKEQGLXLFXAX*XSPTSLGTFPTQALNFAFKDKYKQVF 506
           +K I+ +QRYKG   C FVRIPKEQG   +     +   +  FPTQALNFAFKDKYKQVF
Sbjct: 44  SKQISEEQRYKGMIDC-FVRIPKEQGFLSYWRGNLANV-IRYFPTQALNFAFKDKYKQVF 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 143 VRHTRMGDHETLTPDFXTRRFGVIFVITGSTEG*VC 36
           V + R+ DH  + P       GV+ V    +   VC
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHVAQDESTSLVC 259


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -2

Query: 143 VRHTRMGDHETLTPDFXTRRFGVIFVITGSTEG*VC 36
           V + R+ DH  + P       GV+ V    +   VC
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHVAQDESTSLVC 259


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 147 GSSAHADGGSRNT 109
           GSS H+D G  N+
Sbjct: 382 GSSVHSDSGENNS 394


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 129 PRVPNFPPRHIH 164
           P + NFP R+IH
Sbjct: 451 PVLKNFPTRYIH 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,979
Number of Sequences: 438
Number of extensions: 2231
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)