Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2092
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   3.3  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   4.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   7.6  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    24   7.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   10.0 

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 296 IXISPXNYFRWFFF 337
           I +S  NYF WFFF
Sbjct: 254 IHLSQINYFLWFFF 267


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 275 VIPXTYXIXISPXNYFRWFFFNXLIIYDXIRN 370
           + P T  + +   + FR +FFN L   D +RN
Sbjct: 106 LFPTTKILQMETMDTFRTYFFNCLKESDYVRN 137


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 165  QELEKKIVMDSLIVKSL 115
            Q  +KK+V+D LIV+SL
Sbjct: 1007 QNAQKKLVLDHLIVESL 1023


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 275 RLIXLIVNNYCVACVTWQ*SSEHPSKIEGLLINSLC 168
           R   L  ++Y   C TW   S+H  K+    +++ C
Sbjct: 234 RAFSLFAHHYSYRCNTWFYLSKHMKKVASANMDAQC 269


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 249  LLRRVRDMAIVFRTSEQDRRSAN**PLQQELEKKIVMDSLIVKSLTSIISDNY*QDM 79
            +L ++ D    F  S+  RR+     +  ELEK I M+ L+    TSII   + Q M
Sbjct: 1649 VLHKIVDHREAFPISDYIRRAY----VLSELEKSIRMEKLLGLVETSIIRKTFLQHM 1701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,118
Number of Sequences: 5004
Number of extensions: 14974
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)