Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2092
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   5.6  
SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.6  

>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 908

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 260 IVNNYCVACVTWQ*SSEHPSKIEGLLINSLC 168
           +  NYC A      +S HPS  +G++  ++C
Sbjct: 79  VTKNYCTAHAPGWMTSPHPSVADGVVTRTVC 109


>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 55  TYFSFKKSHVLLIIITYNRC**LNYQTIH 141
           T+  F+K  V + + +Y+R   LNYQ  H
Sbjct: 827 TFVGFEKRRVQITLTSYHRAYSLNYQMFH 855


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,774,908
Number of Sequences: 59808
Number of extensions: 100708
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)