Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2090
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   7e-23
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.013
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   7.8  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  103 bits (247), Expect = 7e-23
 Identities = 51/82 (62%), Positives = 63/82 (76%), Gaps = 5/82 (6%)
 Frame = +1

Query: 22  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 201
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 202 TNIGS-----GVGAAPAAGWSA 252
            + G+      V AAPAAG  A
Sbjct: 61  LSAGAPGAGGAVAAAPAAGGEA 82



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 326 SDDDMGFGLFD 358
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 201 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 55
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 326 SDDDMGFGLFD 358
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 216  RADVGDQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSY 88
            + D+G +VT +      G  T   W+ +YS    D G+F T Y
Sbjct: 2098 QVDLG-RVTRVTGIATQGSPTGDKWVKLYSVEQSDDGHFFTEY 2139


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 206  LVIRSRTLMPSKA-LANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE*TH 45
            L++ S  + P ++ LA  PGQ G+T+T   F+      PV    S+  +    TH
Sbjct: 1763 LIVPSPAIAPVQSQLATTPGQVGNTNT--LFRPASTMVPVQPAVSNETLHPAVTH 1815


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,531,359
Number of Sequences: 59808
Number of extensions: 196059
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)