Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2089
         (450 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    24   0.76 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.4  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   5.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   5.4  

>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 305 VVLDMDEGTLAFCADGRYLRRRGARPCAERXST 403
           +VLDM +  + +  D  YL +R +  C E   T
Sbjct: 191 IVLDMGKNCVTYVFDLFYLSKRASDLCNEANKT 223


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 124 WDVATPTTACVPALSCRPHHLP 59
           +D+AT T    PA+S     LP
Sbjct: 374 FDIATTTKGAAPAVSKARQFLP 395


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 124 WDVATPTTACVPALSCRPHHLP 59
           +D+AT T    PA+S     LP
Sbjct: 199 FDIATTTKGAAPAVSKARQFLP 220


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
 Frame = -3

Query: 145 PTECRGAWD-VATPTTACVPALSC 77
           P      W  V TPTT   P ++C
Sbjct: 300 PGPTYSTWSTVQTPTTVMSPTINC 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,723
Number of Sequences: 336
Number of extensions: 949
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)