Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2089
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   4.1  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   5.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.1  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 278 QFLVPDRVLVVLDMDEGTLAFCADGRYLRRRGARPCAERXSTPSXPXVWGTP 433
           Q L+ +R +  +D    TL+F  D RYL         +   T +   +W  P
Sbjct: 224 QELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIP 275


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 206 LISTQIPAPALIGGPD*TLIAD*VQGRV 123
           L+   +PA   +GGP+  LIA    GR+
Sbjct: 316 LLQNNLPAVRWVGGPEIELIAIATNGRI 343


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 103 SWASPRPTRPCTQSAIRV 156
           SW +P P R C Q  + V
Sbjct: 28  SWGNPMPNRACVQKVLPV 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,407
Number of Sequences: 5004
Number of extensions: 15350
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)