Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2089
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970     28   3.0  
04_01_0588 + 7657510-7657992,7658397-7658843                           27   5.3  
03_06_0101 + 31653860-31654327                                         27   7.0  
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969...    27   9.2  

>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
          Length = 371

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 231 PCLSRYGTPYFYPNPSPSSDRWPRLDSDSRLSAG 130
           PC S   +P    NPSP+S  +P   S S ++ G
Sbjct: 121 PCSSYQPSPRASYNPSPASSSFPSSGSSSHITIG 154


>04_01_0588 + 7657510-7657992,7658397-7658843
          Length = 309

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 SHAPLHSVGYQSLVGATDQSW 182
           +HAP HS+G+ +   A++  W
Sbjct: 177 THAPRHSIGFSTWASASEDRW 197


>03_06_0101 + 31653860-31654327
          Length = 155

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 231 PCLSRYGTPYFYPNPSPSSDRWPRLDSDSRLSAGA 127
           P  + +G P F P+ + +S R     SDSR   GA
Sbjct: 38  PADAAFGYPVFVPSSAAASMRSNSFGSDSRFGGGA 72


>01_06_0542 +
           30096277-30096340,30096444-30096529,30096810-30096934,
           30097405-30097513,30097865-30097981,30098066-30098149,
           30098795-30098914,30099416-30099502,30100160-30100237
          Length = 289

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 72  GRHDSAGTHAVVGVATSHAPLHSVGYQSLV-GATDQSWGWDLGRNKVFHN 218
           G ++  G HAVVGV         +G  +L+ G+   +    +G N +F N
Sbjct: 107 GENNVIGHHAVVGVKCQDLKYKVIGDNNLIMGSCHIAHDCRIGNNNIFAN 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,260,321
Number of Sequences: 37544
Number of extensions: 144934
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)