Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2089
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   5e-14
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.007
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              30   0.77 

>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +3

Query: 90  GTHAVVGVATSHAPLHSVGYQSLVGATDQSWGWDLGRNKVFHNAK 224
           GTHAVVGVAT+ APLH  GY SLVG T+  WGWD+ RNK++H+ K
Sbjct: 116 GTHAVVGVATAKAPLHCTGYHSLVGNTEDGWGWDIVRNKLYHDEK 160



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 38/121 (31%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
 Frame = +2

Query: 2   AQSTDCIRGRTGYTRGLHCWEVVWPXXXXXXXXXXXXXXXXXXXXLSRLSESSRGHRSEL 181
           AQSTD IR + G+ RG H WE+ W                     L      S    +E 
Sbjct: 87  AQSTDSIRAKVGFNRGFHVWEIHWSTRQRGTHAVVGVATAKAP--LHCTGYHSLVGNTED 144

Query: 182 GLGFG*K*XXXXXXXXXXXXXXXXXXXXXXXEQFLVPDRVLVVLDMDEGTLAF-CADGRY 358
           G G+                             F+VPDR  V+LDMDEGTLAF   +G+Y
Sbjct: 145 GWGWDIVRNKLYHDEKGNSTVKYPAHNADIEHNFVVPDRFRVILDMDEGTLAFETLEGKY 204

Query: 359 L 361
           L
Sbjct: 205 L 205


>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 81  DSAGTHAVVGVATSHAPLHSVGYQ--SLVGATDQSWGWDLGRNKVFHNAK 224
           D  GT  ++GVAT  A LH+  Y+  +LVG   +SWG    R +++H  +
Sbjct: 131 DVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQESWGLS-HRGEIWHGGQ 179


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 293 DRVLVVLDMDEGTLAFCADGRYL 361
           D V V+LDMD+GTL F  +G+ L
Sbjct: 245 DMVWVLLDMDKGTLGFMVNGKEL 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,994,567
Number of Sequences: 59808
Number of extensions: 146230
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)