Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2089
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    69   1e-12
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    64   4e-11
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    51   3e-07
U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    29   1.2  

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 27/45 (60%), Positives = 37/45 (82%)
 Frame = +3

Query: 90  GTHAVVGVATSHAPLHSVGYQSLVGATDQSWGWDLGRNKVFHNAK 224
           GTHAVVGVAT +APLH+ GY +L+G TD+S+GWD+ R +  H++K
Sbjct: 170 GTHAVVGVATKNAPLHAAGYTALIGTTDESYGWDITRRECHHDSK 214



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   AQSTDCIRGRTGYTRGLHCWEVVWP 76
           AQSTDCIRG+ GY+RG H W++ WP
Sbjct: 141 AQSTDCIRGKMGYSRGFHVWQIEWP 165



 Score = 33.9 bits (74), Expect = 0.055
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 287 VPDRVLVVLDMDEGTLAFCADGRYLRRRGARPCAERXSTPSXPXVWG 427
           VPD+   +LDMDEG +AF  D  +L     R    +   P    VWG
Sbjct: 232 VPDKFYCILDMDEGYMAFATDDEFL-GVAFRNLKGKTLYPIVAAVWG 277



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 382 LRGKTLYPIVSXRLGH 429
           L+GKTLYPIV+   GH
Sbjct: 263 LKGKTLYPIVAAVWGH 278


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +3

Query: 90  GTHAVVGVATSHAPLHSVGYQSLVGATDQSWGWDLGRNKVFHN 218
           GT AVVG+AT HA LH VGY +L+G+ DQSWGW+L  N + HN
Sbjct: 212 GTVAVVGIATKHAALHCVGYVALLGSDDQSWGWNLVDNVLMHN 254



 Score = 34.7 bits (76), Expect = 0.031
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 2   AQSTDCIRGRTGYTRGLHCWEVVW 73
           AQSTD +RG+ G ++G+H +++ W
Sbjct: 184 AQSTDGVRGKRGISKGVHAFDITW 207


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 20/44 (45%), Positives = 32/44 (72%)
 Frame = +3

Query: 90  GTHAVVGVATSHAPLHSVGYQSLVGATDQSWGWDLGRNKVFHNA 221
           GTHAVVGVAT +APL +  Y +LVG+ ++S+GW++   +  + +
Sbjct: 81  GTHAVVGVATKNAPLQAAEYTTLVGSNNESYGWNIATRECHYGS 124



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 11  TDCIRGRTGYTRGLHCWEVVWP 76
           TDCIRG+ GY+RG H W++ WP
Sbjct: 55  TDCIRGKMGYSRGFHVWQIEWP 76



 Score = 34.3 bits (75), Expect = 0.042
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 281 FLVPDRVLVVLDMDEGTLAFCADGRYL 361
           F VP+++  +LDM++G L+F  D  YL
Sbjct: 138 FNVPEKIYCILDMEQGNLSFATDNEYL 164


>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 367 TPKVASVGAEGERALVHVEHDEHAVRHEE 281
           T +VA +GA+G  +++     EHAV+HEE
Sbjct: 453 TAEVAVMGAKGAVSILFRNDKEHAVQHEE 481


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 367 TPKVASVGAEGERALVHVEHDEHAVRHEE 281
           T +VA +GA+G  +++     EHAV+HEE
Sbjct: 439 TAEVAVMGAKGAVSILFRNDKEHAVQHEE 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,924,948
Number of Sequences: 27780
Number of extensions: 97567
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)