Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2083
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.41 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.8  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
 Frame = +2

Query: 431 PWKQTVPCLDCTRAHATDVRRQXHDGRL*----PGPRAXPYRRCXFRGRMSMKEVDEQM 595
           P   T P   C RA +         GR      P PR  PY R   R R S+    +QM
Sbjct: 47  PGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPYPRFPPYDRMDIRDRRSLHGPQQQM 105


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +2

Query: 116 SPRPKYQTLSSTIQCDSLSSPASLKTQTKPTASTTRLYTTSASA 247
           SP P  Q+ ++ I    ++SPA+       ++ +     ++ASA
Sbjct: 10  SPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASA 53


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 194  QTKPTASTTRLYTTSASAL 250
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 71  SRESTPTES*THTQ*SPRPKYQTLSSTIQCDSLSSPAS 184
           S  STP+   T    +  P Y + S    C S+ + AS
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRSVMTSCSSVPTTAS 113


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 420 PLTSRGSRQYRALTVPELTQQMFDAXNMMAXCDPGHG 530
           P ++ GS       + +L ++ FD+ +      PGHG
Sbjct: 718 PESNNGSSPSVLNAIEKLIEKSFDSRSRQNSSFPGHG 754


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 213 RQRGSIRHLLPHSXLSTPTYGDL 281
           R+ G I HL  H+     T GDL
Sbjct: 361 REEGWIHHLARHAVACFLTRGDL 383


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 522 PGHXRPSCXWRRTSVA*ARVQSRHGTVCFHGM 427
           P   R    WRR      R+ +R    C+H +
Sbjct: 589 PCRPREQLTWRRNFHGPHRLAARSRRCCYHAV 620


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 522 PGHXRPSCXWRRTSVA*ARVQSRHGTVCFHGM 427
           P   R    WRR      R+ +R    C+H +
Sbjct: 481 PCRPREQLTWRRNFHGPHRLAARSRRCCYHAV 512


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,449
Number of Sequences: 336
Number of extensions: 3315
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)