Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2083
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 170 2e-43
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 94 1e-20
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 94 1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 69 6e-13
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 29 0.77
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.2
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 170 bits (413), Expect = 2e-43
Identities = 94/208 (45%), Positives = 115/208 (55%)
Frame = +3
Query: 27 GGTGVRYGAPXSSXDPVRVPRQNHEHILSSPLAQSIRHCRRPYNATLSVHQLV*KHRRNL 206
GGTG G S P + +P +S PYNATLS+HQLV
Sbjct: 141 GGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETF 200
Query: 207 LHRQRGSIRHLLPHSXLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLXKLAVNMVPF 386
+ +P+Y DLNHLVS M+GVTT RFPG+LN+DL KLAVNMVPF
Sbjct: 201 CIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPF 260
Query: 387 PRLHXFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXNMMAXCDPGHGRYLTVXAXSXAX 566
PRLH FM GFAPL + GS ++A++VPELTQQMFDA NMM DP HGRYLTV A
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGK 320
Query: 567 CP*RRSTSKCLTSKTRTPYTLGEXIPNN 650
+ + + +T+ E IP+N
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYFVEWIPDN 348
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/171 (29%), Positives = 80/171 (46%)
Frame = +3
Query: 27 GGTGVRYGAPXSSXDPVRVPRQNHEHILSSPLAQSIRHCRRPYNATLSVHQLV*KHRRNL 206
GGTG GA + ++++ P Q PYN+ L+ H +
Sbjct: 147 GGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTF 206
Query: 207 LHRQRGSIRHLLPHSXLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLXKLAVNMVPF 386
+ + + PTY +LN L++ +S +T LRF G LN DL + N+VP+
Sbjct: 207 MVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPY 266
Query: 387 PRLHXFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXNMMAXCDPGHGRYL 539
PR+H + ++P+ S + + +V E+T Q F+ N M CDP GRY+
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYM 317
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 94.3 bits (224), Expect = 1e-20
Identities = 50/171 (29%), Positives = 80/171 (46%)
Frame = +3
Query: 27 GGTGVRYGAPXSSXDPVRVPRQNHEHILSSPLAQSIRHCRRPYNATLSVHQLV*KHRRNL 206
GGTG +GA + +++ P Q PYN+ L+ H +
Sbjct: 143 GGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTF 202
Query: 207 LHRQRGSIRHLLPHSXLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLXKLAVNMVPF 386
+ + + P+Y +LN L++ +S +T LRF G LN DL + N+VP+
Sbjct: 203 MVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPY 262
Query: 387 PRLHXFMPGFAPLTSRGSRQYRALTVPELTQQMFDAXNMMAXCDPGHGRYL 539
PR+H + +AP+ S + + +V E+T Q F+ N M CDP GRY+
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYM 313
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.9 bits (161), Expect = 6e-13
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 5/170 (2%)
Frame = +3
Query: 27 GGTGVRYGAPXSSXDPVRVPRQNHEHILSSPLAQSIRHCR-RPYNATLSVHQLV*KHRRN 203
GGTG G+ R P++ + P +QS+ +PYN+ L++ +L + +
Sbjct: 143 GGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLT-LNADS 201
Query: 204 LLHRQRGSIRHLLPHSX-LSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLXKLAVNMV 380
++ ++ H+ PT+ N LVS MS TT LR+PG +N DL + +++
Sbjct: 202 VVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLI 261
Query: 381 PFPRLHXFMPGFAPLTSRGSRQYRAL---TVPELTQQMFDAXNMMAXCDP 521
P PR H + + P T++ + +A+ TV ++ +++ N M +P
Sbjct: 262 PSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNP 311
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 28.7 bits (61), Expect = 0.77
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Frame = +2
Query: 299 HNVWCHH---LP*VPRSVER*SXKIGRK-----HGSLPASPLXHARFRSPHIPWKQTVPC 454
H CHH L VP +V + K + HG P P+ H + H PWK C
Sbjct: 366 HEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPR-PVPHNGTKPDHKPWKHEEHC 424
Query: 455 LDCTRAHATDVR 490
C H+ R
Sbjct: 425 -SCHEDHSVHER 435
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.2
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Frame = +2
Query: 23 GGRHRGPV--WGTLLIXRSRESTPTES*THTQ*SPRPKYQTLSSTIQCDSLSSPASLKTQ 196
GG+H G W L S + T + PK L I + S + T
Sbjct: 568 GGKHEGTFENWQLALWGESENPSNTAPLPYDT-LELPKEMVLG--IYSEPNSDLTNSSTL 624
Query: 197 TKPTASTTRLYTTSASALXTVHTHLR*P 280
PT+++ YT SA+A T +H+ P
Sbjct: 625 LSPTSTSFTSYTVSATATPTSTSHIPIP 652
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 69 DPVRVPRQNHEHILSSPLAQS 131
+P+ +P+QNHEH SPL +S
Sbjct: 643 NPLLMPQQNHEH---SPLVRS 660
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 137 TLSSTIQCDSLSSPASLKTQTKPTASTTRLYTTSASA 247
++SST S SSP+S T T + S++ ++S+S+
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 71 SRESTPTES*THTQ*SPRPKYQTLSSTIQCDSLSSPASLKTQTKPTASTTRLYTTSASAL 250
S +STP T P P Q ST +SP++LK +P+ ++ + S A+
Sbjct: 21 SLKSTPKAR--ETTEPPPPSSQQPPSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAV 78
Query: 251 -XTVHTHLR*P*PLSFP 298
+ + L+ PLS P
Sbjct: 79 ASSSNVSLQSQQPLSKP 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,848
Number of Sequences: 5004
Number of extensions: 50283
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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