Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2083
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    28   0.090
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 22  RWAAPGSGMGHPXHLKIP*EYPDRIMNTYSVVPSPKVSDTVVDH 153
           R A+P  GMGH  H   P  +P    +T  V  S K+    VDH
Sbjct: 111 RSASPSPGMGHMGHTPTPNGHP----STPIVYASCKLQAAAVDH 150


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 198 VCVFKLAGELRESHCM 151
           +  F   G +RESHCM
Sbjct: 65  ISFFGCCGAIRESHCM 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 TLSVHQLV*KH-RRNLLHRQRGSIRHLLPHSXLSTPTY 272
           T  +H ++ +H +++ L  Q G  RHL  H+ +  P+Y
Sbjct: 188 TRLLHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSY 225


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 213 RQRGSIRHLLPHSXLSTPTYGDL 281
           R+ G I HL  H+     T GDL
Sbjct: 365 REEGWIHHLARHAVACFLTRGDL 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,546
Number of Sequences: 438
Number of extensions: 3668
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)