Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2082
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0215 + 18692662-18692862,18693049-18693276                       28   6.6  
07_01_1131 - 10510404-10511000                                         27   8.7  
03_02_0328 - 7487759-7488340                                           27   8.7  

>03_04_0215 + 18692662-18692862,18693049-18693276
          Length = 142

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 106 DFGLALTSGRSPDGRHHANDV--QRLLPSVEADGDR 207
           DF +    G++ D +HHA     QR+L SVE + DR
Sbjct: 93  DFTVGAVLGQTKDRKHHAIAYLHQRMLHSVEQNDDR 128


>07_01_1131 - 10510404-10511000
          Length = 198

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 169 GHR-WRDDGRQEIVRK*APVRSPDREGGSVGIPG*WQQ 59
           GHR W  DG + + R  +PVR  D  GG       W++
Sbjct: 20  GHRRWGSDGGEAMPRTTSPVRRCDAGGGGGVADSAWEE 57


>03_02_0328 - 7487759-7488340
          Length = 193

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 69  YPGIPTEPPSRSGLRTGAYFRTIS*RPSSRQRCPEITTVRGSRWRSPIE--TSXPPSPRI 242
           YP  P +PP      T +  +    R  SR      TT  G++ + P+E  T  PP+P +
Sbjct: 58  YPPPPQQPPRSGRASTPSTRQRDRRRKPSRPPPSTETTKGGTQKKKPLERATPLPPAPAV 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,926
Number of Sequences: 37544
Number of extensions: 235164
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)