Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2082
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 36 0.025
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.025
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 36 0.025
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 34 0.10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 32 0.41
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 29 2.2
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29) 28 6.6
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 27 8.8
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 236 SNKDKFQV-NLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
+N++K ++ L V+ + PE IS K +G+V V+G+H + G+ ++F R
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRR 52
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 200 AIANRDVGSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQ 379
A+ D G + DKF + + V F P+ I V+ ++V HE + H Y
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 380 FTR 388
F R
Sbjct: 141 FNR 143
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 245 DKFQV-NLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
D+ ++ L V+ + PE IS K +G+V V+G+H + G+ ++F R
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRR 286
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 200 AIANRDVGSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQ 379
A+ D G + DKF + + V F P+ I V+ ++V HE + H Y
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 380 FTR 388
F R
Sbjct: 375 FNR 377
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 236 SNKDKFQV-NLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
+N++K ++ L V+ + PE IS K +G+V V+G+H + G+ ++F R
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRR 52
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 200 AIANRDVGSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQ 379
A+ D G + DKF + + V F P+ I V+ ++V HE + H Y
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 380 FTR 388
F R
Sbjct: 141 FNR 143
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 236 SNKDKFQV-NLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
+N++K ++ L V+ + PE IS K +G+V V+G+H + G+ ++F R
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRR 52
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 200 AIANRDVGSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQ 379
A+ D G + DKF + + V F P+ I V+ ++V HE + H Y
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 380 FTR 388
F R
Sbjct: 141 FNR 143
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 236 SNKDKFQV-NLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
+N++K ++ L V+ + PE IS K +G+V V+G+H + G+ ++F R
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRR 52
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 200 AIANRDVGSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQ 379
A+ D G + DKF + + V F P+ I V+ ++V HE + H Y
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 380 FTR 388
F R
Sbjct: 141 FNR 143
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 221 GSTITSNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
G+ S DKF + + V+ F PE I V+ ++V HE + H Y F R
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNR 143
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 236 SNKDKFQVNLXVQHFSPEXISVKTADGYVIVEGKHEERQDXHGYIFRQFTR 388
+ +DKF + + V F PE I V+ ++V HE + H Y F R
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNR 142
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 520 E*WXQLARFXWXPXSWKRSRSAPXQRTTXDSTVS 419
E W +L RF W P S +R+++ P S VS
Sbjct: 796 EVWRRLPRFHWAPRSHERAQTEPANTGERSSRVS 829
>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
Length = 1890
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 165 IVGVMTAVRRSSGSKRQSEVLIAKAVRLVSQDNGSRD 55
++ V T R GS S+ L+ +R S+D+GSRD
Sbjct: 739 LLKVRTKSREVLGSGADSDTLLIDLIRKDSRDSGSRD 775
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2
Query: 335 KHEERQDXHGYI 370
KHEER+D HGY+
Sbjct: 72 KHEEREDRHGYL 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,015
Number of Sequences: 59808
Number of extensions: 253006
Number of successful extensions: 806
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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