Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2082
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 425 CRIXGCPLTGC*PXSLP 475
           CRI G P T   P  LP
Sbjct: 442 CRIHGSPATTAAPPQLP 458


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 IETSXPPSPRIRINSRSTXTFNTFRPXK 293
           +ET+  PSP  RI S  + + ++  P K
Sbjct: 505 VETNSSPSPNPRIASAPSSSTSSSPPAK 532


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 46  SKNVSAAIILGYQPNRLRDQDFGLALTSGRSP 141
           S + +   I GYQ  R R  +F +     RSP
Sbjct: 274 SNSSTVGTIFGYQDMRNRGNNFPVYQVEKRSP 305


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 270 TXKLTWNLSLFEVMVXPTSLLAIAICFHGR**SLDIVGVMTAV 142
           T  L WN     VM+  T++L      +G   +L +V  +TA+
Sbjct: 321 TFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 363


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 270 TXKLTWNLSLFEVMVXPTSLLAIAICFHGR**SLDIVGVMTAV 142
           T  L WN     VM+  T++L      +G   +L +V  +TA+
Sbjct: 290 TFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 332


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 270 TXKLTWNLSLFEVMVXPTSLLAIAICFHGR**SLDIVGVMTAV 142
           T  L WN     VM+  T++L      +G   +L +V  +TA+
Sbjct: 341 TFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 383


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 270 TXKLTWNLSLFEVMVXPTSLLAIAICFHGR**SLDIVGVMTAV 142
           T  L WN     VM+  T++L      +G   +L +V  +TA+
Sbjct: 290 TFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAM 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,930
Number of Sequences: 438
Number of extensions: 2156
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)