Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2082
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    28   4.1  
At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to ...    27   7.2  

>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 168 PEITTVRGSRWRSPIETSXPPSPRIRINSRSTXTFNTFRPXKSQ*RQPTATSSSKV 335
           P    V  + +  P   S  P P +R+ +R   + N F+  + Q +QP    S  V
Sbjct: 357 PTTGQVPSASYSLPSSPSPSPQPAVRVEARYLASGNEFKNFQQQQQQPANRESVMV 412


>At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to
           (CER2) [Arabidopsis thaliana] GI:1213594; contains Pfam
           profile PF02458: Transferase family
          Length = 421

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 168 DIVGVMTAVRRSSGSKRQSEVLIAKAVRLVSQDNGSRDIFT 46
           ++VG+       +G KR+    I    R++ QD GS D FT
Sbjct: 310 EMVGISELAALIAGEKREENGAIK---RMIEQDKGSSDFFT 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,226
Number of Sequences: 28952
Number of extensions: 174844
Number of successful extensions: 419
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)