Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2079
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.64 
UniRef50_A0EFZ8 Cluster: Chromosome undetermined scaffold_94, wh...    33   4.5  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 118 AGWWYLPVRTPKRSYHQ 68
           A WWYLP RT KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0EFZ8 Cluster: Chromosome undetermined scaffold_94, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_94,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 685

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 431 PYSKKSTQSVLCCIIDVSQXGGQYSLNNT*RHFFFYCYMDGRAXSPPDVKWLLELI-DIY 255
           P+ K S    L   +  S   G Y   N  R  F+YCY++ +  +PP  K +L+++ DIY
Sbjct: 224 PFEKISQDFTLIGFLSKSIESGSYKGQN--RKTFWYCYINKKPINPP--KQVLQIMRDIY 279

Query: 254 NVNAPS 237
             + P+
Sbjct: 280 RQHNPN 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,816,745
Number of Sequences: 1657284
Number of extensions: 8675326
Number of successful extensions: 14295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14294
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)