Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2078
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    23   2.3  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 345 YQCLSCQCYNSK 380
           Y+C++C+C N K
Sbjct: 871 YKCVTCKCENGK 882


>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 13  EKTLEDFQQVYLVTHLMGADLNNIVRTQK 99
           E+ +++  ++Y   HL+   L   VRTQK
Sbjct: 49  ERCIKESLRLYPSVHLISRALGEDVRTQK 77


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 86  YGHRSFL--MTTFSFWYTRFY 142
           YG ++FL  ++TFS   T+FY
Sbjct: 232 YGFQNFLFVLSTFSICITQFY 252


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 363  QCYNSKIVLKKYIIPKVG 416
            +C   K + +KY +PK+G
Sbjct: 1254 KCVGRKQLAQKYQLPKMG 1271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,261
Number of Sequences: 336
Number of extensions: 2828
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)