Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2078
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.010
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.010
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.38 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 0.010
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 40  VYLVTHLMGADLNNIVRTQKLSDDHVQFLVYQILRGLKYIHSAGIIHR 183
           V L++  +  DL   +R      + +Q +   +L G++Y+HS G++HR
Sbjct: 675 VLLISDRLSRDLYCGIRAGLSWLERIQ-IALDVLEGIRYLHSQGLVHR 721


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 30.7 bits (66), Expect = 0.010
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +1

Query: 40  VYLVTHLMGADLNNIVRTQKLSDDHVQFLVYQILRGLKYIHSAGIIHR 183
           V L++  +  DL   +R      + +Q +   +L G++Y+HS G++HR
Sbjct: 713 VLLISDRLSRDLYCGIRAGLSWLERIQ-IALDVLEGIRYLHSQGLVHR 759


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 43  YLVTHLMGADLN-NIVRTQKLSDDHVQFLVYQILRGLKYIHSAGIIHR 183
           +++ ++ G DL   I +  K  +    F   +I  GL ++H  GI++R
Sbjct: 62  FVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFLHGRGIVYR 109


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 22  LEDFQQVYLVT-HLMGADLNNIVRTQKLSDDHVQFLVYQILRGLKYIHSAGIIH 180
           +E    + L+T  L G  L N +    L  +    ++  I   L++ H+AGI+H
Sbjct: 125 IEQGASLSLITMELCGTTLQNRLDEAILIKNERICILKSITCALQFCHNAGIVH 178


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 103 SDDHVQFLVYQILRGLKYIHSAGIIHR 183
           S+      + QIL  + + H  G++HR
Sbjct: 7   SEADASHCIQQILESVHHCHHNGVVHR 33


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 272 PQLNKSTITNPIHDYVETLQ 331
           PQ+N STI +P+ + + + Q
Sbjct: 799 PQVNDSTILSPVREKLSSSQ 818


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  LMGADLNNIVRTQKLSDDHVQFLV 129
           L G D+   +   K   DHVQFL+
Sbjct: 157 LHGTDIEMRILKTKNECDHVQFLI 180


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  LMGADLNNIVRTQKLSDDHVQFLV 129
           L G D+   +   K   DHVQFL+
Sbjct: 157 LHGTDIEMRILKTKNECDHVQFLI 180


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 324 HYKLRNTYQCLSCQCYNSKIVLKKYII 404
           +Y   N Y   +   YN K+  K YII
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYII 352


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 342 TYQCLSCQ 365
           TYQCL CQ
Sbjct: 61  TYQCLLCQ 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,117
Number of Sequences: 438
Number of extensions: 2930
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)