Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2077
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    24   1.1  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +3

Query: 45  LLPHRMFPL*PMVTRNLHKTSAETPSTPQINGMPDNKALTPQKPVNLLPEVPIQTSRKLS 224
           L P R  P     +  L +  + +P+TP     P  + LTP K  +        TS +L 
Sbjct: 71  LPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDASSKRIXTAFTSTQLL 130

Query: 225 EREQ 236
           E E+
Sbjct: 131 ELER 134


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 421 DSLSMLSAWSDLYR*VTSSDCRLSFTKFTKKCITAF 314
           +S+S+ S W DLY  +T     +       K IT F
Sbjct: 64  ESISLASGWLDLYLGITIQTLGIISNCINAKQITIF 99


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 376 VTSSDCRLSFTKFTKK 329
           VTS  C L+F+ ++KK
Sbjct: 215 VTSEKCNLTFSWYSKK 230


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/57 (19%), Positives = 18/57 (31%)
 Frame = +2

Query: 38  PRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPN 208
           P P P P     ++  + S Q    +T          + G +S           DP+
Sbjct: 397 PTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKTPESGNESDGVCTKEGIVRDPS 453


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  KSPQNISGNTVDP 127
           + PQ+ISG  VDP
Sbjct: 17  QQPQHISGVVVDP 29


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  KSPQNISGNTVDP 127
           + PQ+ISG  VDP
Sbjct: 17  QQPQHISGVVVDP 29


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  KSPQNISGNTVDP 127
           + PQ+ISG  VDP
Sbjct: 17  QQPQHISGVVVDP 29


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  KSPQNISGNTVDP 127
           + PQ+ISG  VDP
Sbjct: 17  QQPQHISGVVVDP 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,693
Number of Sequences: 336
Number of extensions: 2648
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)