Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2077
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 92 7e-20
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 91 1e-19
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 31 0.13
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 0.52
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 28 1.2
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 1.6
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 1.6
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 1.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.1
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 2.1
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 2.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 3.7
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 26 3.7
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 4.8
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 4.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.8
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 6.4
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 25 6.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 8.5
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 91.9 bits (218), Expect = 7e-20
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Frame = +3
Query: 105 SAETPSTPQINGMPDN-KALTPQKPVNLLPEVPIQTSRKLSEREQHDCDVIERLIKSYFY 281
S+ P ++G N K P K +L EV +SERE+ + D+I+ LI SYF
Sbjct: 647 SSSYPLNDSLSGGDTNHKNNHPLKMTDLSNEVETMALEDMSEREEVEVDLIKELITSYFN 706
Query: 282 IVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQAESMLNESEHIAQRRKEAADM 461
+ RK I D VPK +MH LVN KD +Q+ LV+ LY+ D +++L E E++ R++ +
Sbjct: 707 LTRKIIIDQVPKVIMHLLVNASKDAIQNRLVSKLYREDFFDTLLIEDENVKSEREKCERL 766
Query: 462 LKALQRAGQIISEI 503
L +A +IIS +
Sbjct: 767 LSVYNQANKIISTV 780
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 91.1 bits (216), Expect = 1e-19
Identities = 46/122 (37%), Positives = 76/122 (62%)
Frame = +3
Query: 138 GMPDNKALTPQKPVNLLPEVPIQTSRKLSEREQHDCDVIERLIKSYFYIVRKSIQDSVPK 317
G + K L +P P ++ S LS+RE+ D +VI+ LI SYF IV++++ D VPK
Sbjct: 561 GSKNKKRLAAMEP----PPPVLRASTTLSDREKTDTEVIKLLIMSYFNIVKRTLADMVPK 616
Query: 318 AVMHFLVNFVKDNLQSELVTHLYKSDQAESMLNESEHIAQRRKEAADMLKALQRAGQIIS 497
++ ++ + K+++Q EL+ LYKS + +L ESE QRRKE M+++L +A +I+S
Sbjct: 617 SISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVTVQRRKECEQMVESLLQASEIVS 676
Query: 498 EI 503
+
Sbjct: 677 NV 678
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 17 PVYRHKT--PRPSPSPNVPAITDGHEKSP-QNISGNTVDPTDQRNARQQGTDSSEA--SE 181
PV HK P P+P P++P+ ++ P Q+++G ++ PT + +G A +
Sbjct: 212 PVDAHKLLEPLPTPIPSLPSTPSSYQNLPSQSLTGESL-PTVSNQEKDEGVIEKVAVNNT 270
Query: 182 PSARSTDP 205
PS S P
Sbjct: 271 PSVSSKSP 278
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 29.1 bits (62), Expect = 0.52
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 198 PIQTSRKLSEREQHDCDVIERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVT 377
P+QT + + D + + + KS+FYI ++S DS K + L + +L S L
Sbjct: 482 PVQTGMVCAAND--DDEFAQTVCKSFFYISKESGTDSALKFLYKCLNSDSSADLYSLLEE 539
Query: 378 HLYKSDQAESML 413
HL S+ + L
Sbjct: 540 HLPLSEHDDDTL 551
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/76 (19%), Positives = 35/76 (46%)
Frame = +3
Query: 354 NLQSELVTHLYKSDQAESMLNESEHIAQRRKEAADMLKALQRAGQIISEIRETHMWXWSS 533
++ S H Y ++ ES ++ H ++ AAD K+ + + +I ++ + +
Sbjct: 369 SMDSNFEQHWYDAEDYESTTSQLNHYSESGAHAADATKSSVAHNEKVEDISDSDIPIMKT 428
Query: 534 XERXSSLXIVK*ADSS 581
+SL + +D+S
Sbjct: 429 SSNSTSLDADRDSDTS 444
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 41 RPSPSPNVPAITDG--HEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPNI 211
+P+PSP +TD +E + + ++ PT N + + E S++ D ++
Sbjct: 475 KPTPSPPAEQLTDQKQNEDNEDKVKADSNGPTQNENETADASKDMISEEKSSKDADNSL 533
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 53 SPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDP 205
+PN+ A T+ K+ ++ + QQGT +S +EPS+ ++ P
Sbjct: 278 APNLNATTE-QPKNTAEVAQGAASAKAPQQTTQQGTQNSANAEPSSSASVP 327
>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 94 STKHQRKHRRPHRSTECQTTRH*LLRSQ*TFCPKYRSKHH 213
S++ Q P R C RH S FC +YRS+ H
Sbjct: 18 SSEGQLSTSPPRRWRNCTLQRHGSRASADEFCEQYRSRSH 57
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 330 FLVNFVKDNLQSELVTHLYKSDQAE 404
F +N+ + LQ E H++K +Q E
Sbjct: 472 FCINYANEKLQQEFYRHVFKLEQEE 496
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 387 KSDQAESMLNESEHIAQRRKEAADMLKALQRAG 485
KSDQ E MLN + +R+ D+ + ++G
Sbjct: 449 KSDQRERMLNVDQCFTSKRRSLVDIESTINQSG 481
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 90 NLHKTSAETPSTPQINGMPDNKALTPQKPVNLLPEVPIQTSRKLSEREQH 239
NLH ++ P ++ D+ A+TP+KP + +P +++ L +H
Sbjct: 223 NLH---SQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSNSRH 269
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 14 SPVYRHKTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSAR 193
SP Y + SPS VP ++ H +N G++ + + + D S +++ S R
Sbjct: 265 SPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDVFED-FDPSGSNQASLR 323
Query: 194 ST 199
ST
Sbjct: 324 ST 325
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 330 FLVNFVKDNLQSELVTHLYKSDQAE 404
F +N+ + LQ E H++K +Q E
Sbjct: 454 FCINYANEKLQQEFNKHVFKLEQEE 478
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 261 LIKSYFYIVRKSIQDSVPKAVMHFLVNFV----KDNLQSELVTHLYKSDQ 398
LIK I+R + V + V+ LVN + KD + + L+ H+ K+ Q
Sbjct: 249 LIKLLVQIIRSDTKTKVYRLVLAILVNLIDKAPKDTISTMLLEHVDKAVQ 298
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 81 VTRNLHKTSAETPSTPQINGMPDNKALTPQKPVNLLPEVP-IQTSRKLSER 230
+ + LH + +ETP Q + D A + + E+P + T+RK+ E+
Sbjct: 1 MAQGLHNSVSETPEVKQEDNDEDLDAYSWSSSTDSAGEIPSLPTNRKILEK 51
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 35 TPRPSPSPNVPAITDGHEKSPQNI 106
TP+ PSP VP + D E + + +
Sbjct: 240 TPKKKPSPEVPKLPDNRELTVKQV 263
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 32 KTPRPSPSPNVPA 70
+TP+P+PSPN P+
Sbjct: 165 QTPQPAPSPNTPS 177
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/40 (22%), Positives = 18/40 (45%)
Frame = +2
Query: 65 PAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEP 184
P+I + P + G T+D ++ ++G E +P
Sbjct: 2239 PSIDEKQSNEPNTLLGETIDGLHRKRLNEEGITLEERQKP 2278
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = -3
Query: 424 SDSLSMLSAWSDLYR*VTSSDCRLSFTKFTKKCITAFGTES*MDFRTM*K*DLISLSMTS 245
++ L+ +S+WSD + SD L F C++A E M + T D +S TS
Sbjct: 80 TEELAGVSSWSDFFYLFHFSDIPLIFGTLIFTCLSA-ALEPLMTWTTGKVFDALSQYATS 138
Query: 244 QSCCSRSDSL 215
Q + SL
Sbjct: 139 QITLGKMISL 148
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 448 SFLRCAMCSDSLSMLSAWSDL 386
S ++C C L+ +S+W DL
Sbjct: 85 STIKCKQCQSFLTSISSWKDL 105
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 180 NLLPEVPIQTSRKLSEREQHDCDVIERLIKSYFYI----VRKSIQDSVPKAVMHFLVNFV 347
N+ EV + S+K + + L++ ++ + + KS+ SV +++ +L +F+
Sbjct: 249 NIREEVVQELSKKNGDVDYETMSWFNTLLQRFWMLNEPEISKSVSTSVEQSIAEYLPSFI 308
Query: 348 KD 353
K+
Sbjct: 309 KE 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,613
Number of Sequences: 5004
Number of extensions: 45442
Number of successful extensions: 185
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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