Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-2077
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 4e-37
SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16) 44 7e-05
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022) 31 0.94
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 0.94
SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7) 30 1.6
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_49697| Best HMM Match : DUF602 (HMM E-Value=3) 29 2.9
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_6690| Best HMM Match : CC (HMM E-Value=2.9) 29 2.9
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51223| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 5.0
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5) 28 6.6
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5) 28 6.6
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 28 6.6
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 28 6.6
SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_56160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 27 8.8
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 27 8.8
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 27 8.8
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 151 bits (366), Expect = 4e-37
Identities = 72/103 (69%), Positives = 90/103 (87%)
Frame = +3
Query: 213 RKLSEREQHDCDVIERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKS 392
R L+EREQ D D+I +LIKSYF IVRKSIQDSVPKA+M FLVN+VK+ +QSELV LYKS
Sbjct: 780 RGLTEREQMDSDIIRKLIKSYFVIVRKSIQDSVPKAIMAFLVNYVKERIQSELVEKLYKS 839
Query: 393 DQAESMLNESEHIAQRRKEAADMLKALQRAGQIISEIRETHMW 521
++ E++L ESEH+ +RKEAA+MLKALQRAGQIISE+R+TH++
Sbjct: 840 ERFETLLQESEHMHIKRKEAAEMLKALQRAGQIISEVRDTHIY 882
>SB_20156| Best HMM Match : GED (HMM E-Value=6.8e-16)
Length = 172
Score = 44.4 bits (100), Expect = 7e-05
Identities = 32/99 (32%), Positives = 50/99 (50%)
Frame = +3
Query: 219 LSEREQHDCDVIERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYKSDQ 398
L + + + I L+ SY IV K+I+D VPK +M+ ++N SD
Sbjct: 51 LDPQMERQVETIRNLVDSYIRIVSKTIRDLVPKTIMYMIIN---------------NSD- 94
Query: 399 AESMLNESEHIAQRRKEAADMLKALQRAGQIISEIRETH 515
++ ESE AQRR+E M + + A QI+ +I +TH
Sbjct: 95 ---LMEESEEEAQRREEMLKMYHSTKEALQIVGDI-DTH 129
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 65 PAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
P IT+G +P +G T +P TD+RNA TD + A+ S T
Sbjct: 1058 PIITNGTTAAPITTNGTTTEPMSTDERNATTMSTDGTTAAPMSTNRT 1104
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 62 VPAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
VP ITDG +P N+ T P TD A TD + S S T
Sbjct: 1716 VPIITDGTTAAPMNMDRTTAAPMSTDGTTAASMITDGTTVSSISTDGT 1763
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 62 VPAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
+P ITDG +P N+ G T P TD A TD + A+ S T
Sbjct: 2311 IPIITDGATAAPMNMDGTTAAPMSTDGTTAVPMSTDGTTAAPMSTDGT 2358
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +2
Query: 62 VPAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
VP ITDG +P N+ T P TD A TD + S S T
Sbjct: 2627 VPIITDGATAAPMNMDRTTAAPMSTDGTTAASMITDGTTVSSISTDGT 2674
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 65 PAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
P TDG +P N+ G T P TD A TD + A S T
Sbjct: 2212 PMSTDGTTAAPMNMDGTTAVPISTDGTTAAPMSTDGTTAVPMSTDGT 2258
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 65 PAITDGHEKSPQNISGNTVDP--TDQRNARQQGTDSSEASEPSARST 199
P TDG S + G TVDP TD TD + A+ S T
Sbjct: 2052 PMSTDGTTVSSMSTDGTTVDPMSTDGTTVSSMSTDGATAAPMSMDRT 2098
>SB_26641| Best HMM Match : FMN_dh (HMM E-Value=0.022)
Length = 181
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 53 SPNVPAITDGHEKSPQNIS-GNTVDPTDQRNARQQGTDSSEAS 178
S N+ I D E+ N N++ PT R RQQ DS++ S
Sbjct: 35 SENIIVIIDNKEQHTDNSKINNSIQPTKHRRKRQQKLDSTKPS 77
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 30.7 bits (66), Expect = 0.94
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +3
Query: 225 EREQHDCDVIERLIKSYFYIVRKSIQDSVPKA-VMHFLVNFVKDNLQSELVTHLYKSDQA 401
E E+ D+ ++L ++ + + SI+ P A + + KD+L+S+L L K+ Q
Sbjct: 4243 ELERTTSDLSKKLSQAELIVQQLSIESDAPAAQTLVQQLQQEKDDLKSKL-DQLKKTLQ- 4300
Query: 402 ESMLNESEHIAQRRKEAADMLKALQRAGQIISEIRETHMWXWSSXE 539
+S N E + QRR + + L++ R+ Q E+ E W S E
Sbjct: 4301 KSEANAEEAL-QRRTDELEKLQSQTRSLQSQLELIEKEKESWESRE 4345
>SB_41879| Best HMM Match : DUF1658 (HMM E-Value=7)
Length = 180
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 32 KTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARS 196
KTP + P T SP+ D + RNARQ+G S+ S P +
Sbjct: 82 KTPPKQSNLTPPKPTYSLRSSPRKGQAIKTDESPSRNARQKGHKSTPKSSPGVET 136
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 56 PNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEP 184
PN PA+ + P ++ N D + Q+ ARQ+ +E+++P
Sbjct: 171 PNTPAVWHDYNNRPPFLNENAKDASAQQGARQE-DQKAESTQP 212
>SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)
Length = 294
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 50 PSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSA 190
P P+ PA T HE SP + + ++ + T + E SA
Sbjct: 124 PRPSTPASTSNHESSPSTTASTSTSTSNHESLPLMTTSTPTNEETSA 170
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 96 HKTSAETPSTPQINGMPDNKALTPQKPVNLLPE 194
H+ S+ PS N P + LTP P N LP+
Sbjct: 821 HQDSSHFPSFNSSNCSPPSLTLTPHSPQNTLPD 853
>SB_6690| Best HMM Match : CC (HMM E-Value=2.9)
Length = 183
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 44 PSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQ-GTDSSEASEPSAR 193
PS P + P ++S PT+ ARQ G+ +S+ S PSA+
Sbjct: 98 PSKPPKQNSQAPSTNAHPGHVSSTLTKPTEASRARQSVGSSASQKSGPSAQ 148
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 14 SPVYRHKTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSAR 193
SP ++P S S T+ + +P++ SG+T+ PT A Q TDSS +++P +
Sbjct: 110 SPTSIKQSPNSSSSTGQTP-TEKTDSTPKS-SGSTL-PTSSTPATQNPTDSSLSTKPPTK 166
Query: 194 ST 199
T
Sbjct: 167 KT 168
>SB_51223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 56 PNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPN 208
P+ PA G P + G + PTD+ TD S+PSA P+
Sbjct: 44 PSPPADRHGPSDPPTDRHGPSDPPTDRHGPSDPPTDRHGPSDPSADRHGPS 94
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 393 DQAESMLNESEHIAQRRKEAADMLKALQRAGQIISEIRETHMWXWSSXE 539
D+ +S ++ +AQ +K+ + L +A + + E+RE H+ SS E
Sbjct: 475 DELQSKQRDALQLAQLKKQFREQGNELSQATKELEELREEHVKLLSSSE 523
>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
Length = 722
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 89 KSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTD 202
K P I N P D ++ + D+S ++ AR+T+
Sbjct: 63 KQPTTIQANNTSPEDVSSSESETADTSSSNTSQARNTN 100
>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 222 SEREQHDCDVIERLIKSYF----YIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLYK 389
S+ E HDC ++ L+++ ++VR+ D V + +K NL LV + +
Sbjct: 361 SQTEHHDCPPVKNLVRAEVLLGGFLVREMSSDPPCCQVTYVSRVDLKGNLPPRLVNRVTQ 420
Query: 390 SD-QAESMLNESEHIAQRRKEA 452
S QA ++L + ++ RKEA
Sbjct: 421 SQPQAVAVLRDKLE-SRYRKEA 441
>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
Length = 402
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 26 RHKTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARST 199
+ K+ +PS S + D E+SP T D T Q++A Q ++ EP ST
Sbjct: 214 QEKSEKPSSSGEISLSEDEEEQSP------TPDQTTQKDASPQPGSTTREIEPEQAST 265
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 11 HSPVYRHKTPRPSPSPNVPAITDGHEKSPQNISGNT 118
H PV+RH +PRPS ++ I ++ +I +T
Sbjct: 608 HVPVHRHHSPRPSTGLSIDTILHDQARACPSILFST 643
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +2
Query: 56 PNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPNI 211
P V D H+ P T+D TD + A Q G S S ST+ NI
Sbjct: 742 PGVEESLDSHDSDPTLREALTIDDTDGK-AIQLGARDGYISPRSLYSTEENI 792
>SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 41 RPSPSPNVPAITDGHEKSPQNIS---GNTVDPTDQR 139
RP P PAITDG E +P+ ++ GN D++
Sbjct: 51 RPIVYPERPAITDGSEAAPKEVNVDVGNDFTDDDRK 86
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 32 KTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPNI 211
+TP P SP + + E SP++ T T + + + T ++ S RS+ N+
Sbjct: 176 RTPSPVKSPGHSSSSLSSESSPKHSPSATPSTTRSKASLGKATSTTNLDSASRRSSSGNL 235
>SB_56160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 71 ITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDP 205
I+DG E P NIS N+ + + Q S +E SA P
Sbjct: 329 ISDGSESPPSNISDNSKNINTGMSLAQAHAPSGLTAEQSAHGLTP 373
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/57 (24%), Positives = 22/57 (38%)
Frame = +2
Query: 38 PRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPSARSTDPN 208
P P P P VP ++ Q + NT+ P + R T + + R P+
Sbjct: 135 PAPRPRPPVPIPRKSVKRMAQELEDNTIPPPPEYRDRPAPTPRARRIKTPQRVNKPD 191
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +2
Query: 2 DDDH---SPVYR-HKTPRPSPSPN---VPAITDGHEKSPQNISGNTVDPTDQRNARQQGT 160
D DH SP Y H P S + P +D +KSP++ N P D + ++
Sbjct: 134 DSDHDQTSPCYSDHNQTSPCYSDHDQTPPCYSDYDQKSPRDSDHNQTSPRDSYHDQKSPR 193
Query: 161 DSSEASEPSARSTD 202
D S+ + S R +D
Sbjct: 194 D-SDHDQTSPRDSD 206
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 44 PSPSPNVPAITDGHEKSPQNISGNTVDP 127
PSPSPN P T H + N+ DP
Sbjct: 1053 PSPSPNQPVSTAQHGDQHDDNDANSEDP 1080
>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 641
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 437 LCDVLRLVEHALGLVRLVQVSDELGLQIVL 348
LCDVL++ LG++ LV S+ + + IVL
Sbjct: 543 LCDVLQIGFSCLGIMCLVAASNPVSIAIVL 572
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,048
Number of Sequences: 59808
Number of extensions: 394616
Number of successful extensions: 1496
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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