Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2077
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.         74   4e-15
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   1.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   3.3  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   5.7  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   5.7  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   5.7  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   7.5  

>AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.
          Length = 196

 Score = 73.7 bits (173), Expect = 4e-15
 Identities = 36/99 (36%), Positives = 57/99 (57%)
 Frame = +3

Query: 207 TSRKLSEREQHDCDVIERLIKSYFYIVRKSIQDSVPKAVMHFLVNFVKDNLQSELVTHLY 386
           T + L  + +   + I  L++SY  IV K+ +D VPKA+M  ++N  KD +  EL+ HLY
Sbjct: 86  TGQSLDPQLERQVETIRNLVESYMRIVTKTTRDMVPKAIMMLIINNTKDFINGELLAHLY 145

Query: 387 KSDQAESMLNESEHIAQRRKEAADMLKALQRAGQIISEI 503
            +    SM+ ES   AQ+R+E   M  A + A +II ++
Sbjct: 146 ATGDQASMMEESADEAQKREEMLRMYHACKEALRIIGDV 184


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 100 KHQRKHRRPHRSTEC 144
           +++  H RPH+ TEC
Sbjct: 203 RYRHTHERPHKCTEC 217


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 46  FSLTECSRYNRWSREISTKHQRKHRRPHRSTE 141
           +S T+     R  R +STKHQ +H  P  S E
Sbjct: 845 WSNTDLEALERTIRVVSTKHQMRH--PKASVE 874


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/58 (18%), Positives = 26/58 (44%)
 Frame = +2

Query: 14  SPVYRHKTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPS 187
           +P     TP+P P P   + T+G     + +  +  D   + ++ + G+++     P+
Sbjct: 411 APATAKPTPKPIPKPAPSSETNGSSSQERGMESSD-DAKSETSSTKDGSENGSNLWPA 467


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/58 (18%), Positives = 26/58 (44%)
 Frame = +2

Query: 14  SPVYRHKTPRPSPSPNVPAITDGHEKSPQNISGNTVDPTDQRNARQQGTDSSEASEPS 187
           +P     TP+P P P   + T+G     + +  +  D   + ++ + G+++     P+
Sbjct: 411 APATAKPTPKPIPKPAPSSETNGSSSQERGMESSD-DAKSETSSTKDGSENGSNLWPA 467


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 43   AFSLTECSRYNRWSREISTKHQRKHRRPHRSTECQTTR 156
            ++ LT  +  NR + +++ +HQ       RST+   T+
Sbjct: 1242 SYQLTRVAPSNRTNNQLTAQHQDPRGPQGRSTDYHATQ 1279


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 PQKPVNLLPEVPIQTSRKLSER 230
           PQKP N   E   +  RKLS+R
Sbjct: 123 PQKPDNAAAEGAPKPQRKLSDR 144


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,403
Number of Sequences: 2352
Number of extensions: 12168
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)