Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-2077
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.57 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.57 
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          25   0.57 
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   5.3  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 300 QDSVPKAVMHFLVNFVKDNLQSELVTHLYKS-DQAESMLNESEHIAQRRKEAADMLKALQ 476
           ++++PK     L NF   +++S  V  L    D  ESMLN    I    K    M+KA Q
Sbjct: 432 KENLPKYTTEEL-NFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQ 490


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 300 QDSVPKAVMHFLVNFVKDNLQSELVTHLYKS-DQAESMLNESEHIAQRRKEAADMLKALQ 476
           ++++PK     L NF   +++S  V  L    D  ESMLN    I    K    M+KA Q
Sbjct: 432 KENLPKYTTEEL-NFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQ 490


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 300 QDSVPKAVMHFLVNFVKDNLQSELVTHLYKS-DQAESMLNESEHIAQRRKEAADMLKALQ 476
           ++++PK     L NF   +++S  V  L    D  ESMLN    I    K    M+KA Q
Sbjct: 58  KENLPKYTTEEL-NFPGVSIESVTVDKLITYFDHFESMLNNGVSIQSHAKAKNTMIKARQ 116


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 483 RHVVKPLACRR 451
           RHV+KP  CR+
Sbjct: 34  RHVIKPHICRK 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,769
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)